G131363


Basic Information

Item Value
gene id G131363
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30528409 ~ 30530321 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU151341
tgaaaatggaaaataaaacgGAACTGAAAAGGCCTGATGGTGGCGCTAGAGGAAAGGTCAAGTGGTCACCAAATCAATAGGTTTCTTTCACTTGGGGTCTTGACATATTTTATGGCAATCCAGCCATTACTTTGAGATACATCCTGTTCTGTCTGGTTCTCAGCCTGTGGGCATCATGTGTGTAGTGATCCAATATCCATGCCATTTAACAGTTATCACTGGCTCTTGCTCAGCCTTACTCACCAAGAGCCCAGCGCCGGGCCTTCTTAGGAGCAAAGTCACTGATCAAGTCTTGAAGTCCAGCTTTCTAGCTAACTGACTTTCAATGGACAGCATGGCAAGACTGCAAAGCCTGTCCTGGGACATAGTGGACCTCAAATAGTTGATCAGTTTTAGCTTACTGAAAGCTCTCACCACCAGCAACAGTCACAGGCAGTGTGCAAAATATACGTAAAGCAATGCACACTTCTCCAACAATGCTTTGCAGCTGCATCATACAAATTGCattcaggagaccaagaggggacaagttaggggggaaagtggcagcatatacagtgttcaggtgtcttaCTTCATTTTGAAACTCAGGTGTAAGATCTCTGGAATACTTAATGATCAGTGGTTGGCACACAGAAGGGACTTTATCCTTACTAATCTGCCCAACTTTCAGAACAGCAGAAAATTATTCTACAATTTTTTCAGTGGTGTGGAACCTAGTGTCAAAGTCACTTATGTTGGTGTCCACAGCAGTAAAAAAAACACTGTGCTCCAAAACACCGTTGTTGCACTGTCCTGAGCTGTCTCCTCTTGAGAGGTCTCATCATGGaatctcttccttttcctctggCGGCTGTGTTCCTTGCTAAATTGAGGTGCAACATCCATTTGCGTAGCAATCAGTGTTGCCTCAGACAGAAGAGACTCCCATCCATCTCTAAGAGCCTGCATCTCTTCCTTTAAGGCTCTGATATTGGCTGCCTGTGTCAGAGATTTTTCCTGTCCTCAATGCATTGCAGTACCTGCAATTATGCCAATTGACATGTCATTCAACACAATGCTGCCCACCTCCTTTGGGAGGTTGGGTTGGGagtagggctggttcaggggtatggggatggggagacagggctgctgGGCCTGAAGCTGCATCTGTGGGCCTGGCACCAGGCAGGGACAAGTGATTTAGTATGAATAGCTTGCTAAAAGTTTGCCTGTATTGATGTCGGCTAAAACATCTCTGGATGTTTACTTTTTGccaaaaacaagaaaataaaaAGAAACCGCAAGTTTTATTAGTACATTGTAAATCAAATATTATATTAATGACAATAGGTTAATAATTTAATGCTGATTTATTTTAACCTAATGTTCTAAATAATTTTTTAGGGCCCCTCAGTCACAGGCCCTTAGAATCATCCAACCCCCCCATATGGCAACCCTGATCACCAAGATGAATATTGTGATGGGTCCATATTTTATACACAACATCAATCATTTTGTATTATTCACTCATTTAAACAAATAATTAGTCCCAAAAGGGTGGTGTCATTTACAAAAAATAAGATATATTTTAGAGTAATAACTAACTCACACCTCCAGAGAGTATGGACCAGACAGTGATCAGAATTGTGAGCTCCTCAATTCAGTTGGTTTCTCCTCCTCATCGAGTCCGTTTTCAATAGTCCC
>TU151339
CTAAATCAAATTTTAATGGTACAATTCTTGAATGGAAAATTCTCTTAACATTAATGAATAACTTCAAATAAATAACTTAAATATACATTATCCTATGCAACTACAATAAATTAACATTATCATCTATAGAATGGTataacaaacaaaataataaaaatcagcagcagatttttgaactaagtatacataccaactGGAAAATAAGCTGCTGTAAAAGTGGAAACtgaaaatggaaaataaaacgGAACTGAAAAGGCCTGATGGTGGCGCTAGAGGAAAGGTCAAGTGGTCACCAAATCAATAGGTTTCTTTCACTTGGGGTCTTGACATATTTTATGGCAATCCAGCCATTACTTTGAGATACATCCTGTTCTGTCTGGTTCTCAGCCTGTGGGCATCATGTGTGTAGTGATCCAATATCCATGCCATTTAACAGTTATCACTGGCTCTTGCTCAGCCTTACTCACCAAGAGCCCAGCGCCGGGCCTTCTTAGGAGCAAAGTCACTGATCAAGTCTTGAAGTCCAGCTTTCTAGCTAACTGACTTTCAATGGACAGCATGGCAAGACTGCAAAGCCTGTCCTGGGACATAGTGGACCTCAAATAGTTGATCAGTTTTAGCTTACTGAAAGCTCTCACCACCAGCAACAGTCACAGGCAGTGTGCAAAATATACGTAAAGCAATGCACACTTCTCCAACAATGCTTTGCAGCTGCATCATACAAATTGCattcaggagaccaagaggggacaagttaggggggaaagtggcagcatatacagtgttcaggtgtcttaCTTCATTTTGAAACTCAGGTGTAAGATCTCTGGAATACTTAATGATCAGTGGTTGGCACACAGAAGGGACTTTATCCTTACTAATCTGCCCAACTTTCAGAACAGCAGAAAATTATTCTACAATTTTTTCAGTGGTGTGGAACCTAGTGTCAAAGTCACTTATGTTGGTGTCCACAGCAGTAAAAAAAACACTGTGCTCCAAAACACCGTTGTTGCACTGTCCTGAGCTGTCTCCTCTTGAGAGGTCTCATCATGGaatctcttccttttcctctggCGGCTGTGTTCCTTGCTAAATTGAGGTGCAACATCCATTTGCGTAGCAATCAGTGTTGCCTCAGACAGAAGAGACTCCCATCCATCTCTAAGAGCCTGCATCTCTTCCTTTAAGGCTCTGATATTGGCTGCCTGTGTCAGAGATTTTTCCTGTCCTCAATGCATTGCAGTACCTGCAATTATGCCAATTGACATGTCATTCAACACAATGCTGCCCACCTCCTTTGGGAGGTTGGGTTGGGagtagggctggttcaggggtatggggatggggagacagggctgctgGGCCTGAAGCTGCATCTGTGGGCCTGGCACCAGGCAGGGACAAGTGATTTAGTATGAATAGCTTGCTAAAAGTTTGCCTGTATTGATGTCGGCTAAAACATCTCTGGATGTTTACTTTTTGc
>TU151342
CTAAATCAAATTTTAATGGTACAATTCTTGAATGGAAAATTCTCTTAACATTAATGAATAACTTCAAATAAATAACTTAAATATACATTATCCTATGCAACTACAATAAATTAACATTATCATCTATAGAATGGTataacaaacaaaataataaaaatcagcagcagatttttgaactaagtatacataccaactGGAAAATAAGCTGCTGTAAAAGTGGAAACtgaaaatggaaaataaaacgGAACTGAAAAGGCCTGATGGTGGCGCTAGAGGAAAGGTCAAGTGGTCACCAAATCAATAGGTTTCTTTCACTTGGGGTCTTGACATATTTTATGGCAATCCAGCCATTACTTTGAGATACATCCTGTTCTGTCTGGTTCTCAGCCTGTGGGCATCATGTGTGTAGTGATCCAATATCCATGCCATTTAACAGTTATCACTGGCTCTTGCTCAGCCTTACTCACCAAGAGCCCAGCGCCGGGCCTTCTTAGGAGCAAAGTCACTGATCAAGTCTTGAAGTCCAGCTTTCTAGCTAACTGACTTTCAATGGACAGCATGGCAAGACTGCAAAGCCTGTCCTGGGACATAGTGGACCTCAAATAGTTGATCAGTTTTAGCTTACTGAAAGCTCTCACCACCAGCAACAGTCACAGGCAGTGTGCAAAATATACGTAAAGCAATGCACACTTCTCCAACAATGCTTTGCAGCTGCATCATACAAATTGCattcaggagaccaagaggggacaagttaggggggaaagtggcagcatatacagtgttcaggtgtcttaCTTCATTTTGAAACTCAGGTGTAAGATCTCTGGAATACTTAATGATCAGTGGTTGGCACACAGAAGGGACTTTATCCTTACTAATCTGCCCAACTTTCAGAACAGCAGAAAATTATTCTACAATTTTTTCAGTGGTGTGGAACCTAGTGTCAAAGTCACTTATGTTGGTGTCCACAGCAGTAAAAAAAACACTGTGCTCCAAAACACCGTTGTTGCACTGTCCTGAGCTGTCTCCTCTTGAGAGGTCTCATCATGGaatctcttccttttcctctggCGGCTGTGTTCCTTGCTAAATTGAGGTGCAACATCCATTTGCGTAGCAATCAGTGTTGCCTCAGACAGAAGAGACTCCCATCCATCTCTAAGAGCCTGCATCTCTTCCTTTAAGGCTCTGATATTGGCTGCCTGTGTCAGAGATTTTTCCTGTCCTCAATGCATTGCAGTACCTGCAATTA
>TU151343
atttttgaactaagtatacataccaactGGAAAATAAGCTGCTGTAAAAGTGGAAACtgaaaatggaaaataaaacgGAACTGAAAAGGCCTGATGGTGGCGCTAGAGGAAAGGTCAAGTGGTCACCAAATCAATAGGTTTCTTTCACTTGGGGTCTTGACATATTTTATGGCAATCCAGCCATTACTTTGAGATACATCCTGTTCTGTCTGGTTCTCAGCCTGTGGGCATCATGTGTGTAGTGATCCAATATCCATGCCATTTAACAGTTATCACTGGCTCTTGCTCAGCCTTACTCACCAAGAGCCCAGCGCCGGGCCTTCTTAGGAGCAAAGTCACTGATCAAGTCTTGAAGTCCAGCTTTCTAGCTAACTGACTTTCAATGGACAGCATGGCAAGACTGCAAAGCCTGTCCTGGGACATAGTGGACCTCAAATAGTTGATCAGTTTTAGCTTACTGAAAGCTCTCACCACCAGCAACAGTCACAGGCAGTGTGCAAAATATACGTAAAGCAATGCACACTTCTCCAACAATGCTTTGCAGCTGCATCATACAAATTGCattcaggagaccaagaggggacaagttaggggggaaagtggcagcatatacagtgttcaggtgtcttaCTTCATTTTGAAACTCAGGTGTAAGATCTCTGGAATACTTAATGATCAGTGGTTGGCACACAGAAGGGACTTTATCCTTACTAATCTGCCCAACTTTCAGAACAGCAGAAAATTATTCTACAATTTTTTCAGTGGTGTGGAACCTAGTGTCAAAGTCACTTATGTTGGTGTCCACAGCAGTAAAAAAAACACTGTGCTCCAAAACACCGTTGTTGCACTGTCCTGAGCTGTCTCCTCTTGAGAGGTCTCATCATGGaatctcttccttttcctctggCGGCTGTGTTCCTTGCTAAATTGAGGTGCAACATCCATTTGCGTAGCAATCAGTGTTGCCTCAGACAGAAGAGACTCCCATCCATCTCTAAGAGCCTGCATCTCTTCCTTTAAGGCTCTGATATTGGCTGCCTGTGTCAGAGATTTTTCCTGTCCTCAATGCATTGCAGTACCTGCAATTA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106907124

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU151341 False 1689 lncRNA 0.45 1 30528409 30530097
TU151339 False 1483 lncRNA 0.42 1 30528839 30530321
TU151342 False 1255 lncRNA 0.45 1 30529067 30530321
TU151343 True 1088 lncRNA 0.49 1 30529067 30530154

Neighbor

gene id symbol gene type direction distance location
LOC110486664 LOC106605475 coding downstream 10382 30509858 ~ 30518027 (-)
aldh5a1 LOC106605473 coding downstream 19257 30503625 ~ 30509152 (-)
LOC110486614 LOC106580462 coding downstream 44049 30481004 ~ 30484360 (-)
pnp4b LOC106605471 coding downstream 114636 30394852 ~ 30413773 (-)
calb1 LOC106580458 coding downstream 145468 30364891 ~ 30382941 (-)
gbp LOC106605477 coding upstream 27239 30557560 ~ 30558960 (-)
LOC110486705 ccne2 coding upstream 217734 30748055 ~ 30758543 (-)
LOC110486727 tp53inp1 coding upstream 230964 30761285 ~ 30773403 (-)
nagpa LOC106605373 coding upstream 249138 30779459 ~ 30798791 (-)
c2h8orf37 cssa05h8orf37 coding upstream 359494 30889693 ~ 30896340 (-)
G131362 LOC106605474 non-coding downstream 117 30528010 ~ 30528292 (-)
G131360 NA non-coding downstream 1399 30525741 ~ 30527010 (-)
G131358 LOC106605474 non-coding downstream 6546 30521505 ~ 30521863 (-)
G131351 NA non-coding downstream 36477 30491829 ~ 30491932 (-)
G131348 NA non-coding downstream 42400 30485352 ~ 30486009 (-)
G131366 NA non-coding upstream 2712 30533033 ~ 30533458 (-)
G131368 LOC106605476 non-coding upstream 5890 30536211 ~ 30536493 (-)
G131371 LOC106580557 non-coding upstream 11268 30541589 ~ 30542541 (-)
G131372 NA non-coding upstream 13608 30543929 ~ 30544198 (-)
G131419 NA non-coding upstream 60823 30591144 ~ 30591375 (-)
LOC110486376 LOC106605451 other downstream 649841 29859575 ~ 29878744 (-)
LOC110534614 LOC106605399 other downstream 2050578 28475823 ~ 28533709 (-)
G129582 NA other downstream 2217677 28310319 ~ 28310732 (-)
LOC110485663 LOC106579570 other downstream 2378423 27933389 ~ 28149986 (-)
G129250 NA other downstream 2761877 27766157 ~ 27766532 (-)
trnae-cuc LOC106605367 other upstream 366705 30897026 ~ 30899564 (-)
LOC110486852 LOC106605360 other upstream 662098 31192419 ~ 31196292 (-)
LOC110486868 LOC106605361 other upstream 666752 31196917 ~ 31199241 (-)
G132197 NA other upstream 1005726 31536047 ~ 31543009 (-)

Expression


Co-expression Network