G131421


Basic Information

Item Value
gene id G131421
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30592665 ~ 30593696 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU151403
acaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagcccccttaagttaatactttgtagcgccaccttttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagagactgacattttttcccattcctccttgcaaaacagctcaagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcaattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcatgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttccattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcttatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagctt

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU151403 True 1032 lncRNA 0.41 1 30592665 30593696

Neighbor

gene id symbol gene type direction distance location
LOC110486681 LOC106580557 coding upstream 50092 30532828 ~ 30542573 (+)
LOC110486625 LOC106605474 coding upstream 62319 30518443 ~ 30530346 (+)
LOC110534660 LOC106605472 coding upstream 87546 30485372 ~ 30505119 (+)
decr1 decr1 coding upstream 232970 30352768 ~ 30359695 (+)
LOC110486570 LOC106580396 coding upstream 242695 30326490 ~ 30349970 (+)
si:dkey-22o22.2 LOC106605377 coding downstream 24307 30618003 ~ 30746151 (+)
LOC110486724 LOC106581338 coding downstream 205084 30798780 ~ 30807966 (+)
plekhf2 plekhf2 coding downstream 228080 30821776 ~ 30844299 (+)
LOC110534679 LOC106605381 coding downstream 257601 30851297 ~ 30856046 (+)
LOC110534689 LOC106605368 coding downstream 280037 30873733 ~ 30891386 (+)
G131416 NA non-coding upstream 2485 30589913 ~ 30590180 (+)
G131406 NA non-coding upstream 11395 30580972 ~ 30581270 (+)
G131279 LOC106605477 non-coding upstream 19897 30557566 ~ 30572768 (+)
G131315 NA non-coding upstream 44217 30548235 ~ 30548448 (+)
G131304 NA non-coding upstream 60640 30531809 ~ 30532025 (+)
G131424 NA non-coding downstream 1541 30595237 ~ 30595437 (+)
G131448 NA non-coding downstream 16995 30610691 ~ 30610920 (+)
G131493 NA non-coding downstream 115178 30708874 ~ 30709484 (+)
G131494 NA non-coding downstream 115800 30709496 ~ 30709721 (+)
G131502 NA non-coding downstream 153932 30747628 ~ 30761914 (+)
G130414 NA other upstream 802834 29789576 ~ 29789831 (+)
LOC110486279 LOC106605442 other upstream 898814 29685855 ~ 29697686 (+)
G130308 NA other upstream 951569 29600026 ~ 29641096 (+)
G129155 NA other upstream 1107535 29484633 ~ 29485130 (+)
LOC110534631 LOC106580029 other upstream 1114535 29424822 ~ 29478401 (+)
G131491 NA other downstream 106486 30700182 ~ 30700623 (+)
G131517 ccne2 other downstream 154359 30748055 ~ 30749954 (+)
LOC110534710 LOC106605356 other downstream 697774 31262054 ~ 31294577 (+)
eaf1 LOC106581241 other downstream 766740 31360408 ~ 31366322 (+)
G132342 LOC100136303 other downstream 1263952 31834170 ~ 31887572 (+)

Expression


Co-expression Network