G131599 (LOC106605377)


Basic Information

Item Value
gene id G131599
gene name LOC106605377
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30689938 ~ 30690377 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU151604
GCTTGGCCCACGGGCGTGTTCTCTGGGacagtcagggtgtaggaggcaTTGGTGAACTGTGGGGGGCGGAACCCTGCCAGAATAGCCACTGTTGCAGGGGGACCCTTCCTGCCCTGCGTGTCGACCACCTGCACCTTCAGCATGTACTCCCTGCTGGGGGTCAGGGGTCGGCCTGTGGTCCTGACCTCCCCAGAGCTGCGGTCCACTTCAAACGAATCCTCGCCGCCTAGTTACGGGATATAAACAACACgtataaacacacagacacacctggtTCTTCCAAGTGACTCAAAGGTTTCTTGAAGGGATAGTTGACCCCCAAATTAAAGTTGTTCTGTGTTTTCACACCTCAACACACAGCTTGCCCCGGGGCCTTATAGACAATCATGTGAGTGATATCACGTAGCAGAGACAGCTGCGCAGAAATGGACATCCCTAAG

Function

NR:

description
protocadherin Fat 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU151604 True 440 lncRNA 0.54 1 30689938 30690377

Neighbor

gene id symbol gene type direction distance location
gbp LOC106605477 coding downstream 130978 30557560 ~ 30558960 (-)
LOC110486664 LOC106605475 coding downstream 171911 30509858 ~ 30518027 (-)
aldh5a1 LOC106605473 coding downstream 180786 30503625 ~ 30509152 (-)
LOC110486614 LOC106580462 coding downstream 205578 30481004 ~ 30484360 (-)
pnp4b LOC106605471 coding downstream 276165 30394852 ~ 30413773 (-)
LOC110486705 ccne2 coding upstream 57678 30748055 ~ 30758543 (-)
LOC110486727 tp53inp1 coding upstream 70908 30761285 ~ 30773403 (-)
nagpa LOC106605373 coding upstream 89082 30779459 ~ 30798791 (-)
c2h8orf37 cssa05h8orf37 coding upstream 199438 30889693 ~ 30896340 (-)
trnas-aga NA coding upstream 204504 30894881 ~ 30894962 (-)
G131577 NA non-coding downstream 10351 30639644 ~ 30679587 (-)
G131447 NA non-coding downstream 81299 30608406 ~ 30608639 (-)
G131436 NA non-coding downstream 87548 30602155 ~ 30602390 (-)
G131420 NA non-coding downstream 97814 30591857 ~ 30592124 (-)
G131419 NA non-coding downstream 98563 30591144 ~ 30591375 (-)
G131604 NA non-coding upstream 6568 30696945 ~ 30697169 (-)
G131605 NA non-coding upstream 8373 30698750 ~ 30698958 (-)
G131606 NA non-coding upstream 10704 30701081 ~ 30701295 (-)
G131610 NA non-coding upstream 16317 30706694 ~ 30706921 (-)
G131617 NA non-coding upstream 25442 30715819 ~ 30716038 (-)
LOC110486376 LOC106605451 other downstream 811370 29859575 ~ 29878744 (-)
LOC110534614 LOC106605399 other downstream 2212107 28475823 ~ 28533709 (-)
G129582 NA other downstream 2379206 28310319 ~ 28310732 (-)
LOC110485663 LOC106579570 other downstream 2539952 27933389 ~ 28149986 (-)
G129250 NA other downstream 2923406 27766157 ~ 27766532 (-)
trnae-cuc LOC106605367 other upstream 206649 30897026 ~ 30899564 (-)
LOC110486852 LOC106605360 other upstream 502042 31192419 ~ 31196292 (-)
LOC110486868 LOC106605361 other upstream 506696 31196917 ~ 31199241 (-)
G132197 NA other upstream 845670 31536047 ~ 31543009 (-)

Expression


Co-expression Network