G131630 (LOC106605377)


Basic Information

Item Value
gene id G131630
gene name LOC106605377
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30730724 ~ 30731301 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU151635
GTGGATGGTCATTCACATCTGATACCATGATGGTAGCCGTTCCAGTCCCAGACAAGCCCCCACCATCCCTGGCCTCAACCACAACCAGATAGCGGTCCTCCGCCTCACGGTCCAGAGACCGTAGAACTGTACTGATGGTTCCAGTTGAAGGGTTGATGGAGAACAGATTGAGGTTGATCTCGTTGCGAACGTTTTGTACGATGCGGTAGGTCAGTATGGCGTTCTTCCCGGCCTTGGGGTCATCTAAATCCGTGGCCCTTATCTCCATCACTGAGGTGTCGGCGGGAGAGTTCTCAGGCACGTGGCCAACAAAGCAGCCTGAAGAGTCCGGCGCCGGACATGGGAAGACTGGTGCGTTGTCGTTGATGTCATGAACTTCCAAAAGGACGTCAGCAAAGCCAGTGAGTCCCGCCCCTCCCTCATCGGTGGCCAGAACCAGGAAACGCCAGGCCGGGCGCTCCTCACGGTCCAGACGGCGTTGGGCATAGATGCGACCCGTACTCTCATCGATGGTGAACTCACTGCCGGCTCCCTGGCCGTGGAGTGAGTAGCGCAGGGCGCTCTGGTCTGCCTCCTGG

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU151635 True 578 lncRNA 0.51 1 30730724 30731301

Neighbor

gene id symbol gene type direction distance location
gbp LOC106605477 coding downstream 171764 30557560 ~ 30558960 (-)
LOC110486664 LOC106605475 coding downstream 212697 30509858 ~ 30518027 (-)
aldh5a1 LOC106605473 coding downstream 221572 30503625 ~ 30509152 (-)
LOC110486614 LOC106580462 coding downstream 246364 30481004 ~ 30484360 (-)
pnp4b LOC106605471 coding downstream 316951 30394852 ~ 30413773 (-)
LOC110486705 ccne2 coding upstream 16754 30748055 ~ 30758543 (-)
LOC110486727 tp53inp1 coding upstream 29984 30761285 ~ 30773403 (-)
nagpa LOC106605373 coding upstream 48158 30779459 ~ 30798791 (-)
c2h8orf37 cssa05h8orf37 coding upstream 158514 30889693 ~ 30896340 (-)
trnas-aga NA coding upstream 163580 30894881 ~ 30894962 (-)
G131629 NA non-coding downstream 1077 30729432 ~ 30729647 (-)
G131628 LOC106605377 non-coding downstream 1750 30728577 ~ 30728974 (-)
G131620 LOC106580611 non-coding downstream 10734 30719750 ~ 30719990 (-)
G131619 NA non-coding downstream 11014 30719394 ~ 30719710 (-)
G131617 NA non-coding downstream 14686 30715819 ~ 30716038 (-)
G131661 NA non-coding upstream 79023 30810324 ~ 30810727 (-)
G131663 NA non-coding upstream 83372 30814673 ~ 30815862 (-)
G131712 NA non-coding upstream 184037 30915338 ~ 30918439 (-)
G131723 NA non-coding upstream 369678 31100979 ~ 31101745 (-)
G132020 NA non-coding upstream 420290 31151591 ~ 31175420 (-)
LOC110486376 LOC106605451 other downstream 852156 29859575 ~ 29878744 (-)
LOC110534614 LOC106605399 other downstream 2252893 28475823 ~ 28533709 (-)
G129582 NA other downstream 2419992 28310319 ~ 28310732 (-)
LOC110485663 LOC106579570 other downstream 2580738 27933389 ~ 28149986 (-)
G129250 NA other downstream 2964192 27766157 ~ 27766532 (-)
trnae-cuc LOC106605367 other upstream 165725 30897026 ~ 30899564 (-)
LOC110486852 LOC106605360 other upstream 461118 31192419 ~ 31196292 (-)
LOC110486868 LOC106605361 other upstream 465772 31196917 ~ 31199241 (-)
G132197 NA other upstream 804746 31536047 ~ 31543009 (-)

Expression


Co-expression Network