G131731 (LOC100136479)


Basic Information

Item Value
gene id G131731
gene name LOC100136479
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31106841 ~ 31175978 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU151765
CTGCATTTCCTCTCTACGTTCAAGTATACAATGAGCCCAAACTAGCAGAACaggctctcacacacagacatgtttTATGGAACCCTGTCTCGACCAGTTTGGCCCCAGAGTGTAAATCAACATTAAATCTTTCTTCTCAAGGGGTGCATCTAGAAGTGGTTCTTGTGGATACTTCTTACTCCTTTGCAATAACATATTCCTTAGGATGACCTATGGTAAAGATGAGGATTATTAAGTAAATAAGGAAAATGAAATACATGGAAACCATCACCATAAAATGTTAGTTTCTTTCATctgtttaaaaaacaaataagTCAGAGGAACAACTGGCCGTGTTGTAACTCACATAGCTGATGGTGAATATCAGCAATGCCGCCACAATCCCCACAATGGAAAGAACTAGAATGGTATCCCTTTCTTCTGATTGGTCTGTGGACTCAAGGCAATCTGTCACTCTGAGGTGAACCTGCCCCTCCTGGTTCTGCTCTCCTACAGGTGCTGCCAGGAGACACTTGTACCTTCCGCTATCAACAGCCGTTACATTGGGCAGGAAGATATCGAAAGAATCATCAGCCAAAAGTTCCacttcacgctccagaccggCGTACCATTGGGTGGTGCTATTAGGTGATAGCCTCTTCATCAATAGGCCAGACTCCTTATTAGAGGGCTCCTCACCCAGCTTGTACCACCTCACCGCCCGGTATTGGACCCCAGGCTTACATATTGCTTTACATTTCAGAATGGAGTCCTCTCCACAAACTGACTTCACCTCTTGTGTAGGCCTATCCTGTGTGAGGCCACCTTGCACAGAGGCAGCTAATATGCAGACGAGTTGAAAAAGCATAATTGTAGTACACAGCAACGAAGATGACGATTTAGAACAGGAGGGTAGCAGTTTATATACTTCAGAAAGAGAAGTTAAACTGGGATTTCCCCGACTGCGTCACATTCTGAAGTGCGCGTGCACTCCCTCCACCCACATGACCGATTGCGAATCTGCAGACATGAGACATGCTCACCACCGCtctttgcaaaataaatgtacacacaatatacccacatgggtgattgataGATGAATTGAGGTCCACACCGccaggtggtggtggtaatgcaccttaaaggtggttgccaaccgccatataacgTCCAAAAATAAGAGATTCTTAGAAATGTACTAGGTTTACCCTTTCATCtgtagattaattgtcagagtagaggatcGTGTGCATTTCAGATGTattaacaacccaatgtttatatcccagggcaAATTAGGTAGCTAAATTGGCATGAATGTTTCAGGCGTTTTGACCTGtctccaaattaatatagttggttcagagttcgttttgatatttccaCGTGCGTGTCCTGATCAagtctggtgtggatggacaaaattAACATGCGCACATGGATGTACG

Function

NR:

description
CD83 antigen-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU151765 True 1430 lncRNA 0.44 5 31106841 31175978

Neighbor

gene id symbol gene type direction distance location
LOC110534689 LOC106605368 coding upstream 215455 30873733 ~ 30891386 (+)
LOC110534679 LOC106605381 coding upstream 250795 30851297 ~ 30856046 (+)
plekhf2 plekhf2 coding upstream 262542 30821776 ~ 30844299 (+)
LOC110486724 LOC106581338 coding upstream 298875 30798780 ~ 30807966 (+)
si:dkey-22o22.2 LOC106605377 coding upstream 360690 30618003 ~ 30746151 (+)
sri sorcn coding downstream 23357 31199335 ~ 31202392 (+)
LOC110486889 NA coding downstream 33007 31208985 ~ 31222079 (+)
mxtx2 NA coding downstream 80539 31255824 ~ 31261130 (+)
LOC110534710 LOC106605356 coding downstream 86076 31262054 ~ 31294577 (+)
LOC110486933 can7 coding downstream 124024 31300002 ~ 31315913 (+)
G131721 NA non-coding upstream 5876 31100748 ~ 31100965 (+)
G131720 NA non-coding upstream 7396 31099200 ~ 31099445 (+)
G131719 NA non-coding upstream 50555 31056060 ~ 31056286 (+)
G131556 NA non-coding upstream 198610 30902804 ~ 30908231 (+)
G131540 NA non-coding upstream 245747 30860556 ~ 30861094 (+)
G131773 NA non-coding downstream 12030 31188008 ~ 31188315 (+)
G131777 NA non-coding downstream 19400 31195378 ~ 31195723 (+)
G131782 NA non-coding downstream 31998 31207976 ~ 31208235 (+)
G131794 NA non-coding downstream 52195 31228173 ~ 31228578 (+)
G131813 NA non-coding downstream 73641 31249619 ~ 31249833 (+)
G131517 ccne2 other upstream 356887 30748055 ~ 30749954 (+)
G131491 NA other upstream 406218 30700182 ~ 30700623 (+)
G130414 NA other upstream 1317010 29789576 ~ 29789831 (+)
LOC110486279 LOC106605442 other upstream 1412990 29685855 ~ 29697686 (+)
G130308 NA other upstream 1465745 29600026 ~ 29641096 (+)
eaf1 LOC106581241 other downstream 184458 31360408 ~ 31366322 (+)
G132342 LOC100136303 other downstream 681670 31834170 ~ 31887572 (+)
G133473 LOC106605294 other downstream 1991460 33167438 ~ 33169378 (+)
G133663 LOC106605282 other downstream 2320476 33496454 ~ 33497285 (+)

Expression


Co-expression Network