G132020


Basic Information

Item Value
gene id G132020
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31151591 ~ 31175420 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU152094
CACCCCTTGAGAAGAAAGATTTAATGTTGATTTACACTCTGGGGCCAAACTGGTCGAGACAGGGTTCCATAaaacatgtctgtgtgtgagagcctGTTCTGCTAGTTTGGGTTCATTGTATACTTGAACATAAAGAGGAAATGCAGAGAAAGACTAGGGCACGTTTGAAGCTGTGCAAGGAGCCTAAGAGTTATGTCTACTTTCCAGGAGAAGAATTCATCTTTAGAGCATATGGAGGCAGACAACCCTCTGGCCGGTCCCGTAGAACTAAGATGTTTAGGCTTTTCAAAGAAATGAAGCAGAAACAGCAACCTACACACTTTCACTCAGGCAGCCAAACAGCAGTAAAGCCAGGCTAGAGCAGCAGTTTCCCGTGTTGGAAGAATTTGGTGGGACACGCTGGACTCTGCACAGAGAGATGAAACCAACCAATACGGCATTCCATATGAGCCAAGCAAATCTCTCAATGAACTCTAATGTTCAGgcattattgacaagtttttgttattttgtgaGGCCAAAACAATATTTTATTAATCTTGTATGCAGAACCCAAAAATATTATTCCTCCTAGCATTACGAAAGTGGGCTTTGGTGAATATTTGTTTTTTGAACATGATCAGCAATTGTGTGTATACATTGAAAATAATGAAGTCGTAAATGATTTTGTAACGTACTGTTTCTGATGTACATGTGC
>TU152095
ATCTTCGTTGCTGTGTACTACAATTATGCTTTTTCAACTCGTCTGCATATTAGCTGCCTCTGTGCAAGGTGGCCTCACACAGGATAGGCCTACACAAGAGGTGAAGTCAGTTTGTGGAGAGGACTCCATTCTGAAATGTAAAGCAATATGTAAGCCTGGGGTCCAATACCGGGCGGTGAGGTGGTACAAGCGGGAGGTACAAGTGTCTCCTGGCAGCACCTGTAGGAGAGCAGAACCAGGAGGGGCAGGTTCACCTCAGAGTGACAGATTGCCTTGAGTCCACAGACCAATCAGAAGAAAGGGATACCATTCTAGTTCTTTCCATTGTGGGGATTGTGGCGGCATTGCTGATATTCACCATCAGCTATGAATATGTTATTGCAAAGGAGTAAGAAGTATCCACAAGAACCACTTCTAGATGCACCCCTTGAGAAGAAAGATTTAATGTTGATTTACACTCTGGGGCCAAACTGGTCGAGACAGGGTTCCATAaaacatgtctgtgtgtgagagcctGTTCTGCTAGTTTGGGCTCATTGTATACTTGAACATAAAGAGGAAATGCAGAGAAAGACTAGGGCACGTTTGAAGCTGTGCAAGGAGCCTAAGAGTTATGTCTACTTTCCAGGAGAAGAATTCATCTTTAGAGCATATGGAGGCAGACAACCCTCTGGCCGGTCCCGTAGAACTAAGATGTTTAGGCTTTTCAAAGAAATGAAGCAGAAACAGCAACCTACACACTTTCACTCAGGCAGCCAAACAGCAGTAAAGCCAGGCTAGAGCAGCAGTTTCCCGTGTTGGAAGAATTTGGTGGGACACGCTGGACTCTGCACAGAGAGATGAAACCAACCAATACGGCATTCCATATGAGCCAAGCAAATCTCTCAATGAACTCTAATGTTCAGgcattattgacaagtttttgttattttgtgaGGCCAAAACAATATTTTATTAATCTTGTATGCAGAACCCAAAAATATTATTCCTCCTAGCATTACGAAAGTGGGCTTTGGTGAATATTTGTTTTTTGAACATGATCAGCAATTGTGTGTATACATTGAAAATAATGAAGTCGTAAATGATTTTGTAACGTACTGTTTCTGATGTACATGTGC
>TU152093
ATCTTCGTTGCTGTGTACTACAATTATGCTTTTTCAACTCGTCTGCATATTAGCTGCCTCTGTGCAAGGTGGCCTCACACAGGATAGGCCTACACAAGAGGTGAAGTCAGTTTGTGGAGAGGACTCCATTCTGAAATGTAAAGCAATATGTAAGCCTGGGGTCCAATACCGGGCGGTGAGGTGGTACAAGCGGGAGGTACAAGTGTCTCCTGGCAGCACCTGTAGGAGAGCAGAACCAGGAGGGGCAGGTTCACCTCAGAGTGACAGATTGCCTTGAGTCCACAGACCAATCAGAAGAAAGGGATACCATTCTAGTTCTTTCCATTGTGGGGATTGTGGCGGCATTGCTGATATTCACCATCAGCTATGAATATGTTATTGCAAAGGAGTAAGAAGTATCCACAAGAACCACTTCTAGATGCACCCCTTGAGAAGAAAGATTTAATGTTGATTTACACTCTGGGGCCAAACTGGTCGAGACAGGGTTCCATAaaacatgtctgtgtgtgagagcctGTTCTGCTAGTTTGGGCTCATTGTATACTTGAATGTAAAGAGGAAATGCATAGAAATACTAGGGCACATTTGAAGCAGAGCAACGAGTCTatcatgctgaccacaccgcttgtGTTATGTGCGTGAGCgtggcaaaataaatgtacacatacctGTTATTTAGCAATACCATCCAAACTGCTCGCGCGCATCAACGAGCGCctgcgtagccaggcgctaaaatagacgCTTTATGCGCTGCAAGTCCggcttctcccatctcctcattggtttttcagagcatatacccacatgggtgattgaaagatgcgATCCACACTCCAgcccagttggtggtggtaatgcaccttaaagttggttgtcAAACGCCATATAAAGTCAGAAgaagactgatggaggagagattactagaaacaaactaagtttacccttttatctctggattaattgtcagagtagaggaccttgtgcatttcaggtaaactAACAACCCAATACTTATACCTTCCAGGAGAAGAGTTCACCTCTAGAGCAGATGGAGGCAGACAACCCTCTGGCCGGGACTATAGAACCAATATGTGTAGGCTTTTCAAAGAAATTAAACTGTAGCCTATACCCTTTCACTCAGGCAGCCAAACAGCAGTACAAAGTCAGGCTAGAACAGCAGTTCTCCAGCAATGATTGCTCGTCTGCAGCATCCACTCGCCTGTGATGCGCAAGCAGCAGGGCCTGCTGAAGGGACCCACGATCTAAGCCCCAAGATCTAACCTCAATAAGGAGCTTCAGGAAGGGGTGCGGGAATGGTCGACGATGAGGGGTCATTCTGGAGGGTTGCTCCATGGCAACGTGGGGGTTAATcccatttacatttgagtcaacCCAGGAATTGAGGTCGACATTGACTTTGAACTGGGAAATGACCAATGTGTACAGCATTGATCTTTTAGAATTGCACGCCTAATTCAATTCCTGTACTGACTGGTATTGAAATAAAATTGATTAATGTTCCTCTAAGCAAAATGAAAGTGGGCTTTGGTGAAAAGTAACttgtattgtttttttaaatatgatCAGCAATTCTGTGGATACATTGAAAATAAAGCCTTGTAAATAATTTTGTAACTAACTGTATCTGATGTATGCTGTCTGAGGTGCTAAATGGCTTTTAACAAATCTCTACCTATTTCACAagacaaatacataaatacataaatacctCTTTGCTAATAATCTTTTGA

Function

NR:

description
CD83

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU152094 False 697 lncRNA 0.45 2 31151591 31152623
TU152095 False 1118 lncRNA 0.39 7 31151591 31175420
TU152093 True 1754 lncRNA 0.53 5 31172956 31175420

Neighbor

gene id symbol gene type direction distance location
LOC110486768 NA coding downstream 20870 31128831 ~ 31130721 (-)
trnas-aga-54 NA coding downstream 51767 31099743 ~ 31099824 (-)
trnas-aga-53 NA coding downstream 54660 31096850 ~ 31096931 (-)
trnas-aga-52 NA coding downstream 57529 31093981 ~ 31094062 (-)
trnas-aga-51 NA coding downstream 71874 31079636 ~ 31079717 (-)
LOC110486838 LOC106605362 coding upstream 4589 31180009 ~ 31191472 (-)
LOC110486852 LOC106605360 coding upstream 17043 31192419 ~ 31196292 (-)
LOC110486868 LOC106605361 coding upstream 21497 31196917 ~ 31199241 (-)
herpud2 LOC106605359 coding upstream 55933 31231353 ~ 31248873 (-)
pkdc LOC106605355 coding upstream 122713 31298133 ~ 31299976 (-)
G131723 NA non-coding downstream 49846 31100979 ~ 31101745 (-)
G131712 NA non-coding downstream 233152 30915338 ~ 30918439 (-)
G131663 NA non-coding downstream 335729 30814673 ~ 30815862 (-)
G131661 NA non-coding downstream 340864 30810324 ~ 30810727 (-)
G131630 LOC106605377 non-coding downstream 420290 30730724 ~ 30731301 (-)
G132066 NA non-coding upstream 23984 31199404 ~ 31202388 (-)
G132075 NA non-coding upstream 49838 31225258 ~ 31225789 (-)
G132055 NA non-coding upstream 53531 31228951 ~ 31229522 (-)
G132053 NA non-coding upstream 80494 31255914 ~ 31258119 (-)
trnae-cuc LOC106605367 other downstream 252027 30897026 ~ 30899564 (-)
c2h8orf37 cssa05h8orf37 other downstream 255608 30889693 ~ 30896340 (-)
LOC110486376 LOC106605451 other downstream 1273023 29859575 ~ 29878744 (-)
LOC110534614 LOC106605399 other downstream 2673760 28475823 ~ 28533709 (-)
G129582 NA other downstream 2840859 28310319 ~ 28310732 (-)
G132197 NA other upstream 360627 31536047 ~ 31543009 (-)
LOC110486999 prdm1 other upstream 459900 31631886 ~ 31648795 (-)
LOC110514821 NA other upstream 1563409 32738829 ~ 32756992 (-)

Expression


Co-expression Network