G132066


Basic Information

Item Value
gene id G132066
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31199404 ~ 31202388 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU152165
TTCCACATATATGGTTGTGTTTATTactctctttcacatacagacAAAATTACTCCCAGCTATATTTAGGGATATATTGATTATCATGATGAATAGTAAAGACTTTCAACAGTGACATAATATACAGAACATGCAGTGGTGACACGGGTTTATAGGCACACCTAGTGGTTAAAGTTGGCAAATATTCCAGTTTCCTAAGGTAATGTTACAATTTTATAGCAACTTCCTATTTCAAAACTTCCTATTTAGTCATGTTTGTATAAAAGCAATCAAAAAATGCAAGCGATTTGTGAGTATCAAAAATACATGTCAGAATTAATTTTTACAcatgctaaattgtaaatattaTGGGAGTTAAGAGGTAGTCCCTCAGATGTTTTTCTGCTCTGTCTCTTCATGTGCTCATCGTGCACTggatgaaATCATCGTATGGAAATGTGGCCATTCCCTGTCCAGCTTGGTCCCGCTTTCGGAACAAATCAGTCAGGGTTCTGAGTTTCACACAACAAGCTACGTAGTCATCAAAGGTGATCTTCCCCTGAGAACTGAATCTCTTGATGATGCAGTTCATGGCTTGTGGGCTCAGTCTGTAGCCtgtaacacacaaacaaacatgtcaAATGAACACATATAAACGAATACACCCTTTGTGCTTGTACGTACCCATGGAAGTGACTGCCTGGTGCATCTCCTGGGGGTCCACGGTCCCACTCTGGTCACGATCAATGGACATGAAGTGCTGCTTCCAGCCATTGAGCACGGTCCACAGCTCCTTGAACTCGTTGAAGCCCATAGTACATGACATGTCTCTCTGAGGGGTCGCTTCAGTCAAGGAACAGGAACAGCAGTGACCTCACAACCTTACCTCAAACATGAATATAGACGGCTAAAGGTTTCCTGAATCATTTCAATATTTAGATGATGTTGTCCTGATATATCTAGTTGTTTTTTCCCCATTCAAGAAAAATCCATGGAACACAGTCATACAATGTGAGAGGACTTTCTGCAAACTCTGAATGCACAAAAAAACTGTCACTTACGCATATTCCATCTCATATTATTGTCCTGGTAGCTAGTAGGGACCATAGTATTTTAAaaatctgtgtgtctgtactgactgGTTAGTCAAGGATACATCCAGCATGTTGATCATCAGTCTGCAGGTCTCCAGGTTAAAAGCTGTCAGAGATAAGATAACAGTTCATCAAACCACAGGCAGCTCTCCATACAATGTAAAGAATAGaataaaacaaaatactgcattgAAAAATGACTGGGAGTTTGCGGTTGCCGTCGGTCTTGTACATGGTGTCACTCTTACGTTTGTAGCCACCAGAGAAGTTAGCCTGTGTGAGGCATTGCTGGAGCTCTTCCGCTGATATGTGCCCATCCTTCCAATGTCAAAACATATAGGGGAAAAAATACTTACTGAGAccaaaacaatgcatttttagaTGACAGTAagctgttttgactgtgttgagACTAGCAGATAGCTCAATATGTCAATCTGTAAGTCTTATTACCTGGCCTGCAACAGCAGCAAAATATCCATAGAGAGGGTCTTGCTGCTGACCAGGGTATCCTCCAAAGCCAGGTCCACCAGGGGGGTGGCCACCAGCAGGGGCACCTCCATactgcgagacagacCCTCCTGGGTATCCGCCTGCGGGAGCACCATATCCAGGATAACTCATTTCTATGAATGAAAAGAATAAGACTGTGAAACCAACTGGCAATAAAGTATCCACTTCCACGACTTGCCCTTCTTGACACACAAGGGGAGTGTCGGCTGTCCTGCTTTACAATAAGCAATGGGAGGGATGAATTTGAGTTCTAAGCTGTTGTCTTTGGGAACCTTTATTTGGAGTAAAAGAGTGGATGTAGTTGAATAGAAGTCAAAGTATAAACTTTTACCAGAGTATGTTTTGCTAAAAT

Function

NR:

description
sorcin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU152165 True 1938 lncRNA 0.56 5 31199404 31202388

Neighbor

gene id symbol gene type direction distance location
LOC110486868 LOC106605361 coding downstream 163 31196917 ~ 31199241 (-)
LOC110486852 LOC106605360 coding downstream 3229 31192419 ~ 31196292 (-)
LOC110486838 LOC106605362 coding downstream 7932 31180009 ~ 31191472 (-)
LOC110486829 LOC100136479 coding downstream 23874 31172967 ~ 31175530 (-)
LOC110486775 LOC106605366 coding downstream 45587 31151553 ~ 31153817 (-)
herpud2 LOC106605359 coding upstream 28965 31231353 ~ 31248873 (-)
pkdc LOC106605355 coding upstream 95745 31298133 ~ 31299976 (-)
LOC110486940 LOC106605354 coding upstream 115217 31317605 ~ 31352632 (-)
LOC110486970 metl6 coding upstream 155446 31357834 ~ 31360219 (-)
LOC110486958 LOC106605352 coding upstream 163941 31366329 ~ 31388549 (-)
G132020 NA non-coding downstream 23984 31151591 ~ 31175420 (-)
G131723 NA non-coding downstream 97659 31100979 ~ 31101745 (-)
G131712 NA non-coding downstream 280965 30915338 ~ 30918439 (-)
G131663 NA non-coding downstream 383542 30814673 ~ 30815862 (-)
G132075 NA non-coding upstream 22870 31225258 ~ 31225789 (-)
G132055 NA non-coding upstream 26563 31228951 ~ 31229522 (-)
G132053 NA non-coding upstream 53526 31255914 ~ 31258119 (-)
G132090 NA non-coding upstream 66787 31269175 ~ 31269380 (-)
G132095 LOC106581260 non-coding upstream 69985 31272373 ~ 31275952 (-)
trnae-cuc LOC106605367 other downstream 299840 30897026 ~ 30899564 (-)
c2h8orf37 cssa05h8orf37 other downstream 303421 30889693 ~ 30896340 (-)
LOC110486376 LOC106605451 other downstream 1320836 29859575 ~ 29878744 (-)
G132197 NA other upstream 333659 31536047 ~ 31543009 (-)
LOC110486999 prdm1 other upstream 432932 31631886 ~ 31648795 (-)
LOC110514821 NA other upstream 1536441 32738829 ~ 32756992 (-)
G134102 NA other upstream 1545820 32748208 ~ 32788121 (-)
LOC110487618 LOC100380645 other upstream 2010276 33208500 ~ 33225125 (-)

Expression


Co-expression Network