G131968


Basic Information

Item Value
gene id G131968
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31577067 ~ 31578629 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU152032
TTGACAAGTTTTATTCACAAGTTATTTCCCCCGCTGTTCTTTAGACAAATCTGAAGTTAAGAAAAGGCCACATGCAGGTGTAGCAGCACGTTTAAAACGCTAACATTTTAAATATAAAACGTCAAACATGTGCAAGACAAAACTGAgaaacttaagggggggagataaGCATTTCCAAGCTTGAGGTAGAACCACAAAATAAAATGGTCAATGGGTGTAGATAAAAGGCCAAGTCAAACAAAATGAATCTTATTGAATGTCGCTGATCCACAGACCAAGGTGCTTTATTTACCCAGTGGTGTTCTCTTGTAATATACTGCCTATTGATTAGGCTACTTTTCCTGTGTAATGACTTCTTTGGTAGCACTTTATTTGACACTATATCATTCATAAAGTCAGTTACATTAACAGTAATACCCCATAACTAACTTATGAAAATCTTTAGCACCACTAGTTACTACTATTATCGCAACTGTCATTCACAATTTTGTTTAATTTCTTGattcaatttttattttatttttttacctttatttaactaggcaagacagttaagaacaaattcttatttacaatgacagcctaggaacagtgggttaactgccttgttcaggggcagaacaaaatTTATTGATATAAGCACCATAAGGTATCTTATAACTCATGCAGTATATTTAAATGGCACATCAAATGTGCAGTGTTAGTACTCTAGTAAAATAAAGTGCTACTTTCTAGTGTGGCTACAGTAGCAAAGTCCCCATGTGAAAAAACTGATAGAGATGCAGACATGGCTTTTCTTGTGCAAGACAGAATCCATTACTGCATCCATAAAACCACTGATAACATTCACACCAATGTCTGAGTATGGTTCACCCGTAGACAGGTTCACGTTATTTTTTCAGACCTACATTGATTCCTGTAGCCAAGCTGTTGCACAACGCAAGGTGACGTAGTGTGGTGAAATGCATGCTAGGACTGTTCCAAAGACGTCGCTGTGTTCTTGTGTGGATGCTCGGTTTATGACTTGCAAGCTGATACAAGCATTACAATATCAAAAATATGAACAATTACACgcaaattataaaaaatatttagttagcattttttggggggttgctATTACTTTTTAGTTATGGGGTGGAGTACATCGACAAGGTTGCAGACAGACAAAGACTGAGGCTGTGTACTTTAAAATAGTTCATTGAGAGGAGAATAAATGTCTTcataaagaggggaagggaaCATCCAGTACCCAACCATGACCCTATGGTTGGTGGCAGAGGTGGGATCCAAGGAGGGGTGCCCATGGAGCTAGTGTATGTCGAGGCTGTGAGTCAGTGGCGGGGGGCCAGTAACGTCCGTCTGGGGGTTCAGAGGTCGGTTCATTTTCCATGGGTTTGGGGGAAGTGTGTCAGTATGATGTGGAGAGGGGATGAGTTATAGGATCTTCTGAAGGATGGAATTGGGCACTTCTAGAGTCTCGTCCTTTACCAAGACGATGTCATAAGAGTCCAGATATTTCTCCAAACGC
>TU152033
TTGACAAGTTTTATTCACAAGTTATTTCCCCCGCTGTTCTTTAGACAAATCTGAAGTTAAGAAAAGGCCACATGCAGGTGTAGCAGCACGTTTAAAACGCTAACATTTTAAATATAAAACGTCAAACATGTGCAAGACAAAACTGAgaaacttaagggggggataaGCATTTCCAAGCTTGAGGTAGAACCACAAAATAAAATGGTCAATGGGTGTAGATAAAAGGCCAAGTCAAACAAAATGAATCTTATTGAATGTCGCTGATCCACAGACCAAGGTGCTTTATTTACCCAGTGGTGTTCTCTTGTAATATACTGCCTATTGATTAGGCTACTTTTCCTGTGTAATGACTTCTTTGGTAGCACTTTATTTGACACTATATCATTCATAAAGTCAGTTACATTAACAGTAATACCCCATAACTAACTTATGAAAATCTTTAGCACCACTAGTTACTACTATTATCGCAACTGTCATTCACAATTTTGTTTAATTTCTTGattcaatttttattttatttttttacctttatttaactaggcaagacagttaagaacaaattcttatttacaatgacagcctaggaacagtgggttaactgccttgttcaggggcagaacaaaatTTATTGATATAAGCACCATAAGGTATCTTATAACTCATGCAGTATATTTAAATGGCACATCAAATGTGCAGTGTTAGTACTCTAGTAAAATAAAGTGCTACTTTCTAGTGTGGCTACAGTAGCAAAGTCCCCATGTGAAAAAACTGATAGAGATGCAGACATGGCTTTTCTTGTGCAAGACAGAATCCATTACTGCATCCATAAAACCACTGATAACATTCACACCAATGTCTGAGTATGGTTCACCCGTAGACAGGTTCACGTTATTTTTTCAGACCTACATTGATTCCTGTAGCCAAGCTGTTGCACAACGCAAGGTGACGTAGTGTGGTGAAATGCATGCTAGGACTGTTCCAAAGACGTCGCTGTGTTCTTGTGTGGATGCTCGGTTTATGACTTGCAAGCTGATACAAGCATTACAATATCAAAAATATGAACAATTACACgcaaattataaaaaatatttagttagcattttttggggggttgctATTACTTTTTAGTTATGGGGTGGAGTACATCGACAAGGTTGCAGACAGACAAAGACTGAGGCTGTGTACTTTAAAATAGTTCATTGAGAGGAGAATAAATGTCTTcataaagaggggaagggaaCATCCAGTACCCAACCATGACCCTATGGTTGGTGGCAGAGGTGGGATCCAAGGAGGGGTGCCCATGGAGCTAGTGTATGTCGAGGCTGTGAGTCAGTGGCGGGGGGCCAGTAACGTCCGTCTGGGGGTTCAGAGGTCGGTTCATTTTCCATGGGTTTGGGGGAAGTGTGTCAGTATGATGTGGAGAGGGGATGAGTTATAGGATCTTCTGAAGGATGGAATTGGGCACTTCTAGAGTCTCGTCCTTTACCAAGACGATGTCATAAGAGTCCAGATATTTCTCCAAACGC

Function

NR:

description
hypothetical protein Z043_107991, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU152032 False 1531 lncRNA 0.56 2 31577067 31578629
TU152033 True 1529 lncRNA 0.49 2 31577067 31578629

Neighbor

gene id symbol gene type direction distance location
eaf1 LOC106581241 coding upstream 210745 31360408 ~ 31366322 (+)
LOC110486933 can7 coding upstream 261154 31300002 ~ 31315913 (+)
LOC110534710 LOC106605356 coding upstream 282490 31262054 ~ 31294577 (+)
mxtx2 NA coding upstream 315937 31255824 ~ 31261130 (+)
LOC110486889 NA coding upstream 354988 31208985 ~ 31222079 (+)
LOC110486995 atg5 coding downstream 10845 31589474 ~ 31624014 (+)
LOC110534719 LOC106605346 coding downstream 263109 31841738 ~ 31857595 (+)
LOC110487037 LOC106605342 coding downstream 335051 31913680 ~ 31933154 (+)
LOC110487045 LOC106581064 coding downstream 363337 31941966 ~ 31974601 (+)
LOC110487089 LOC106581052 coding downstream 406730 31985359 ~ 31987549 (+)
G131957 NA non-coding upstream 15687 31560610 ~ 31561380 (+)
G131946 NA non-coding upstream 37630 31539012 ~ 31539437 (+)
G131925 NA non-coding upstream 64925 31509542 ~ 31512142 (+)
G131923 NA non-coding upstream 72222 31504637 ~ 31504845 (+)
G131918 NA non-coding upstream 90636 31486185 ~ 31486431 (+)
G131970 NA non-coding downstream 13511 31592140 ~ 31592593 (+)
G131983 NA non-coding downstream 48366 31626995 ~ 31627345 (+)
G131988 prdm1 non-coding downstream 53335 31631964 ~ 31633994 (+)
G131998 NA non-coding downstream 78778 31657407 ~ 31657610 (+)
G132000 NA non-coding downstream 80624 31659253 ~ 31659535 (+)
G131517 ccne2 other upstream 827113 30748055 ~ 30749954 (+)
G131491 NA other upstream 876444 30700182 ~ 30700623 (+)
G130414 NA other upstream 1787236 29789576 ~ 29789831 (+)
G132342 LOC100136303 other downstream 279019 31834170 ~ 31887572 (+)
G133473 LOC106605294 other downstream 1588809 33167438 ~ 33169378 (+)
G133663 LOC106605282 other downstream 1917825 33496454 ~ 33497285 (+)
G133760 LOC106605274 other downstream 2235404 33814033 ~ 33814483 (+)
G134735 LOC100136012 other downstream 2383788 33962417 ~ 33962658 (+)

Expression


Co-expression Network