G131988 (prdm1)


Basic Information

Item Value
gene id G131988
gene name prdm1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31631964 ~ 31633994 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU152057
TTTCCAATTTCTCTCCTCTAGGGCTAAAGATGAAAGGGGATGCTTTGGTCATACTTTAGggttggaggaagagagggagagagaaaaaaaaagagaatggGGACTGATGTGCAACTGCTTCCAGGTCACCGGCATGGGGTCAGTTGCTATGGAGACAAACCATATGTCATCttacagccattataacagtcCAATCATATTGAATAGTGGGAGGAGCACCGGCAATTAAGTCATAAAGGGGAGGGGCCAGTGCATAAGAAGGCCGAGGTGCTTTGGTCTGTGCCATTTAAGAATGAGAAGGGGGATACATTTTtctcaaacaaaacaaaaactacaAAACCACAGCTAAAGAGCTAACACTTCATCACAGACAAACAGTACTCTTGGTCTTCTTTTCGATTCTTTAAAAGTCTCTTCTTTTTGGTGTGTTTGAAACTAAAGCCAAGTAAACTTTGGTTACTCGCCTCGAATCTGACAAATCCCATTTGAGAAGGTTTACTTGGTCCCCTTTTGCTATTGACAGTGTTTTGAAGTTCCCTTGGACTGTGGGCGGGGGGGGGATTCCCGGACTCACAGTCTTTATATGCTACATATTGAGCAGACTTCTCTGCACTTTGGATCATGTGGAGCTGCACTCCAGTTCATTTTGGAGTCTTCAAGTAGCAAAAGCAATAAATAGAAACACACTTGCCTTCAGTTTCCCtctgaacagacacacacatacttacactccTACTCACAGGCATACAATCATACACACATTGAGGTAACTGTTGTTGAAaatatacaaacaaacaaaaagcccTTTTTTGTAGAGCTCAGGATGAGCGTGGACATAGGGATGCTTGCTGGACGGGTCAGAAGGTCAAGCAACACCTTTTCTTTCTAATCAACAGTTCTGTTCACCTTTGGCAAAACAAAGTTGTGACCTTTGACCCTTTTTTAACCTGCTATATTgtttaaataaaatttaaaaaaagagaaGTGGGCACCCCTGCTTCTCAACAGGTCACACAGGACagatacaggcagagagagagaaagtatatACAAAGAAATGGCCCCAGAGTGAAATCAAAACCAGAAAAACAAACAGTAAATTACAATGAATTACCTGGTCATTGTCAACATCACTTCCACATATTGCTTTTTGAAGACAAAATAATTGCATAATAAATTAAGGAGGTTATATAACAAATTGAACAAAAATAACACTTGGAAAAGAGacaaataatagtaataataatgatatgaAATCCAGGGTGGATGATTGTCCTGTCTTAAGTGTAGGACACAGTGGAACAGTTTAGTAGTCTGGGGACAGTGTCTCTTGGAGCCCTGAGTACAGAAGTCCCTGAAAGTTTGAAAACCCCAGTCGCTACAACcatcaaaaatatatttacacTCATTGCTCCTGCTAACCAAGTTCTCAGAGCCACAGTCTGACTCAACGTCCTTCAAACGGTGAGCTTAAGCCTGTTCCTCGGACTCCTGCTTGATCGTGACGTTGGAAGGAAGAAGCGGACTGCTTCGGCGCAGTTTGATAACCGACGTCTCATTGACTGAATTGTACAGGCCGTAACCTGTAGACTGGAGCTCACTGGCGCCGCCCTTGTGGTGGTGGTAGCCGGAGGTCTTGAGGTCCATCTCCCTCCACAGCATCCCCAGGACCTGCTTCTCCAGGACAGCCTCAACCTCAACCCCTCCCTGGAGCTGGTCCAGCCTCTCAGCGTGGTCGCTCATGTCGAAGCGCTCAATCTCCTCGTTGATGCGCTGGAGCTCTTCCTGGGTGGAGGGGCTGGGGGTGGGGCCACCTGAGGAGGTGACGGCAGCCAGACAGTAGCCCTTCAGGTGTAGCCGCAGGCTGCACAGGTGAATGTAGTGGCGGTGGCAGTGGGGGCACTTGTGTGGCCGCTCGCGGGAGTGAAGGCGCTTGTGCAGCTTGAGGTGGACAAACTGGGTGAACTTGGCAGGGCAGAGCTTGCACGAGTAGGGCTTCTCACCCGAGTGGAGGCGCAGGTGGGTCTTTAG

Function

symbol description
prdm1 Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II. Located in cytoplasm and nucleus.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU152057 True 2031 lncRNA 0.50 1 31631964 31633994

Neighbor

gene id symbol gene type direction distance location
LOC110486995 atg5 coding upstream 7950 31589474 ~ 31624014 (+)
eaf1 LOC106581241 coding upstream 265642 31360408 ~ 31366322 (+)
LOC110486933 can7 coding upstream 316051 31300002 ~ 31315913 (+)
LOC110534710 LOC106605356 coding upstream 337387 31262054 ~ 31294577 (+)
mxtx2 NA coding upstream 370834 31255824 ~ 31261130 (+)
LOC110534719 LOC106605346 coding downstream 207744 31841738 ~ 31857595 (+)
LOC110487037 LOC106605342 coding downstream 279686 31913680 ~ 31933154 (+)
LOC110487045 LOC106581064 coding downstream 307972 31941966 ~ 31974601 (+)
LOC110487089 LOC106581052 coding downstream 351365 31985359 ~ 31987549 (+)
LOC110534747 LOC106605338 coding downstream 353690 31987684 ~ 32027099 (+)
G131983 NA non-coding upstream 4619 31626995 ~ 31627345 (+)
G131970 NA non-coding upstream 39371 31592140 ~ 31592593 (+)
G131968 NA non-coding upstream 53335 31577067 ~ 31578629 (+)
G131957 NA non-coding upstream 70584 31560610 ~ 31561380 (+)
G131946 NA non-coding upstream 92527 31539012 ~ 31539437 (+)
G131998 NA non-coding downstream 23413 31657407 ~ 31657610 (+)
G132000 NA non-coding downstream 25259 31659253 ~ 31659535 (+)
G132002 NA non-coding downstream 35220 31669214 ~ 31669425 (+)
G132004 NA non-coding downstream 47894 31681888 ~ 31682695 (+)
G132011 NA non-coding downstream 61196 31695190 ~ 31695449 (+)
G131517 ccne2 other upstream 882010 30748055 ~ 30749954 (+)
G131491 NA other upstream 931341 30700182 ~ 30700623 (+)
G130414 NA other upstream 1842133 29789576 ~ 29789831 (+)
G132342 LOC100136303 other downstream 223654 31834170 ~ 31887572 (+)
G133473 LOC106605294 other downstream 1533444 33167438 ~ 33169378 (+)
G133663 LOC106605282 other downstream 1862460 33496454 ~ 33497285 (+)
G133760 LOC106605274 other downstream 2180039 33814033 ~ 33814483 (+)
G134735 LOC100136012 other downstream 2328423 33962417 ~ 33962658 (+)

Expression


Co-expression Network