G132278


Basic Information

Item Value
gene id G132278
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31672227 ~ 31672676 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU152393
cccaaaccttccataacaaagccatcacctacagagagatgaacccggagaagagtcccctaagcaagctggtcctggggctctgttcacaaacacaaacacaccccacagagccccaggacagcagcacaattagacccaaccaaatcatgagaaaacaaaaagataattacttgacacattggaaagaattaacaaaaaaacagagcaaactagaatgctatttggccctaaacagagaatacacagtggcagaatacctgaccactgtgactgacccaaacttaaggaaagcttctACTATGAACAGACAGTGAGCATAACCTTGCTACTGAGAAAGGCCGctataggcagacctggctctcaagagaagacaggataggtgcacactgcccacaaaatgaggtggaaactaagctgcacttccgaacctcctgccaaatgtatgac

Function

NR:

description
PREDICTED: uncharacterized protein LOC104955046

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU152393 True 450 lncRNA 0.37 1 31672227 31672676

Neighbor

gene id symbol gene type direction distance location
LOC110486999 prdm1 coding downstream 23549 31631886 ~ 31648795 (-)
dctn3 LOC106605350 coding downstream 76499 31592146 ~ 31595728 (-)
LOC110486984 nt5c3 coding downstream 81385 31577445 ~ 31590842 (-)
trnap-agg-2 NA coding downstream 95368 31576788 ~ 31576859 (-)
LOC118939115 NA coding downstream 95984 31568460 ~ 31576243 (-)
LOC110487017 LOC106605347 coding upstream 92525 31765201 ~ 31777787 (-)
LOC100136303 LOC100136303 coding upstream 185018 31857694 ~ 31883061 (-)
LOC118939268 NA coding upstream 194421 31867097 ~ 31871227 (-)
LOC110534727 LOC106581127 coding upstream 216354 31889030 ~ 31892905 (-)
LOC110534740 NA coding upstream 224790 31897466 ~ 31906130 (-)
G132248 NA non-coding downstream 49114 31618037 ~ 31623113 (-)
G132246 atg5 non-coding downstream 67515 31597397 ~ 31604712 (-)
LOC118936732 bbs9 non-coding downstream 111793 31474894 ~ 31567154 (-)
G132279 NA non-coding upstream 4790 31677466 ~ 31677739 (-)
G132286 NA non-coding upstream 24073 31696749 ~ 31696950 (-)
G132305 NA non-coding upstream 40198 31712874 ~ 31713085 (-)
G132581 LOC106605342 non-coding upstream 241034 31913710 ~ 31915220 (-)
G132594 NA non-coding upstream 268040 31940716 ~ 31941065 (-)
G132197 NA other downstream 129218 31536047 ~ 31543009 (-)
LOC110486868 LOC106605361 other downstream 473415 31196917 ~ 31199241 (-)
LOC110486852 LOC106605360 other downstream 475935 31192419 ~ 31196292 (-)
trnae-cuc LOC106605367 other downstream 772663 30897026 ~ 30899564 (-)
LOC110514821 NA other upstream 1066153 32738829 ~ 32756992 (-)
G134102 NA other upstream 1075532 32748208 ~ 32788121 (-)
LOC110487618 LOC100380645 other upstream 1539988 33208500 ~ 33225125 (-)
G134668 NA other upstream 2192812 33865488 ~ 33865937 (-)
G135575 NA other upstream 2931539 34604215 ~ 34604478 (-)

Expression


Co-expression Network