Gene
RNA
| Item | Value |
|---|---|
| gene id | G132581 |
| gene name | LOC106605342 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 31913710 ~ 31915220 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| SWI/SNF complex subunit SMARCC1-like isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU152740 | True | 412 | lncRNA | 0.48 | 2 | 31913710 | 31915220 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110534740 | NA | coding | downstream | 7580 | 31897466 ~ 31906130 (-) |
| LOC110534727 | LOC106581127 | coding | downstream | 20805 | 31889030 ~ 31892905 (-) |
| LOC100136303 | LOC100136303 | coding | downstream | 30649 | 31857694 ~ 31883061 (-) |
| LOC118939268 | NA | coding | downstream | 42483 | 31867097 ~ 31871227 (-) |
| LOC110487017 | LOC106605347 | coding | downstream | 135923 | 31765201 ~ 31777787 (-) |
| LOC110487053 | LOC106605337 | coding | upstream | 112006 | 32027226 ~ 32056238 (-) |
| LOC110487099 | NA | coding | upstream | 153598 | 32068818 ~ 32075136 (-) |
| LOC110487106 | LOC106605335 | coding | upstream | 180311 | 32095531 ~ 32218170 (-) |
| lysmd1 | LOC106605332 | coding | upstream | 453402 | 32368622 ~ 32370951 (-) |
| LOC110487143 | tmod4 | coding | upstream | 459402 | 32374622 ~ 32387882 (-) |
| G132305 | NA | non-coding | downstream | 200625 | 31712874 ~ 31713085 (-) |
| G132286 | NA | non-coding | downstream | 216760 | 31696749 ~ 31696950 (-) |
| G132279 | NA | non-coding | downstream | 235971 | 31677466 ~ 31677739 (-) |
| G132278 | NA | non-coding | downstream | 241034 | 31672227 ~ 31672676 (-) |
| LOC110486999 | prdm1 | non-coding | downstream | 281204 | 31631886 ~ 31648795 (-) |
| G132594 | NA | non-coding | upstream | 25496 | 31940716 ~ 31941065 (-) |
| G132612 | NA | non-coding | upstream | 63372 | 31978592 ~ 31979092 (-) |
| G132613 | NA | non-coding | upstream | 65230 | 31980450 ~ 31980955 (-) |
| G132614 | NA | non-coding | upstream | 66650 | 31981870 ~ 31982088 (-) |
| G132615 | NA | non-coding | upstream | 67295 | 31982515 ~ 31982840 (-) |
| G132197 | NA | other | downstream | 370701 | 31536047 ~ 31543009 (-) |
| LOC110486868 | LOC106605361 | other | downstream | 714898 | 31196917 ~ 31199241 (-) |
| LOC110486852 | LOC106605360 | other | downstream | 717418 | 31192419 ~ 31196292 (-) |
| trnae-cuc | LOC106605367 | other | downstream | 1014146 | 30897026 ~ 30899564 (-) |
| LOC110514821 | NA | other | upstream | 823609 | 32738829 ~ 32756992 (-) |
| G134102 | NA | other | upstream | 832988 | 32748208 ~ 32788121 (-) |
| LOC110487618 | LOC100380645 | other | upstream | 1297444 | 33208500 ~ 33225125 (-) |
| G134668 | NA | other | upstream | 1950268 | 33865488 ~ 33865937 (-) |
| G135575 | NA | other | upstream | 2688995 | 34604215 ~ 34604478 (-) |
