G132907 (tmod4)


Basic Information

Item Value
gene id G132907
gene name tmod4
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 32374648 ~ 32377402 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU153094
agtATTTACAGATTTTCTTTTCCTAGATATTGCACCACCACCATGTAGGAGTTCAGTCATTTTCTGAGTGTGTTTTCATGGCACAGTCTAGAAGCATAAATGACACTTTACAACACTTTTTTACAATGCTTTTATGATGAATTCAATGGTCTACAAAAAGCTATTTGTGGTTAATGAAATGGAAAGCTTGGACACAGACATAGAAATGAACACCCGGCCTTGAGAGGAGCACAGAGGGTTTGTTGCGCCCCATTGACAAAGCTAGCGCAAAGCTGTCAATGGCAGTTGTTTGAGTTGTTAGGTCCAAGGGGCTGAATTGATAGGCTAGCGTCTTGTGAGCGCAATCTTGTTGCTCCACTCTCATCTCATCTTACTCTCTGTTGACGAATGTCATTGTTCCTGGTGATGGCGATGGCTGCTCTAGCCCGAGGCCCCTGCTGGGTGAAGTGGTAGCCGATCTTTACGATGCTGGAGTTGTTCTCCAACATGGTGGCAATCTCCATCTCACAGGAGTCCCCCAGTTTCTGTCTCTGGTTGTCAATCTTGATCTCGGTCAGTGTGGTGTTGTTGGCCATGGCCTTGACGATGGCATTCATGCCCTCGCAGGTGATGAAGTTGGACTCGATGTTAAGACTCTGCAGAGTGGTGTTCTCCTGGAGCATCTCAGCAACAGCCTgattcacacacagacagactagaCTAGAGTCACATTCATTAGTAACAGGGGGGAAATTACAATAAGGATGTGAAAATGAAGATTCTTTGTTGCTAGTCTGGGGGAGAAAGATGTACTCACATAGGCCACGGGGTCGTTGCTACGGGTAGCGGCAATGCTCAGATACTCCACGTGAGTGTTGCCCTTCATCGCCTCAAAGATCTCTTTCAGAGTTGGGATGGGAATGTCCTACAGGACAGACAGATCTCAATCACTTTATGCTGATTCAGTACGCCATAACACACAAGGCTACACGCTACCATCAAGTGATCTCATCCTCCATTGTAGAATTGGTCACTGTGTACGTTCAGACCATAGGATCTAAAGCCCACTGGCTTCACCTTGATGTTGTTGAGGTTGACATCAAACAGGCTGCTGTCGTTTTTCTGGATCTGCTGAAGGGTTTCCTCCACGTTTGTGGGGTTGGGGGGCTCGTCTGGGAAGATCTTGAATGCATCTGGTTTTACTACGCCTAAAAGCACAGGAGTATCACAGGTTAGTGTGACTTTCCTAAACATGTAATATACAGAATACCGTAGTAGGTATGTTCTGCTCTGCTGGTCAACCTCGTCATACGTACTGTTGATGCCCTCTGTGTTGGCGATGGTACCAGTGGTGCCCAATGCGTCGTAGTACTGCTTGTTGCTCATCAGTGTGTACATTCCCAGAATAGCTGCAAAGAAATGGGAAGGATTTATATATCTGTAACTCTCATTCATCATCCAGTAATATTTCCTCAGTTCAACATAATTAATGGTAGCTGTCAGCTGAGACCTTTAGCATGTTATTGCCCCAGTAAGTAATCACAAGGCCTTAATTATAACTAAACTGAGAGTGTATGTGACTGCAATAATTTATGAGGGCATTGTTTTGACAGGCAGGTCTCCCAATCTCAATTATACTCTACATATCTTCATGTAGAGAGGTGTATCTATTTCAACAACTGAATTGTACATTTACAGTATACACTCAACACTGTGCAGTACATTGTATCATGAGGTACAGTATTTACCATGTTATGCACGTGCCTACTCTGTGTGTCTGCTTGACCAGATAAGGACATTGTAGCCTTTCCTCAGTTCTCACAGAGAGAGCTGCAGTCACTGTCTCTAATCTCAGTGCCTCCAGGCCCTAAGGACGTTATGAAACCAAACAATGCGAGCCATGCAGACACACCAAGCCCAATGTTATTCTAACTGAAAATGGGCCAACACATAATGAATGGTTATTTGGCCCCTAATTTAGATGCATACATAGACATAGAGGCCATTGTATTGTTCAGTTTGACACCACGCCCTGGGGACAAGTACTTTAAATTCCAAATATGCGGGTGAGTTAGCTCAGCTAAGCACTGCTAATTTTACAAGATGGGACGTAGAACAATGGTCTCCTAAAAATATTGGACTGGAGCTGCTGTTGCTTTGCTCAAATCCCCAGTAGAGGGCAGCACTTTGAATATCTCTCTCACAGTCTCATTAAAGACCAAACTGTGTCACACACCAACTGCTGTGACAGCAATCC

Function

symbol description
tmod4 Predicted to enable tropomyosin binding activity. Acts upstream of or within skeletal myofibril assembly. Predicted to be active in striated muscle thin filament. Is expressed in head muscle and myotome. Orthologous to human TMOD4 (tropomodulin 4).

NR:

description
tropomodulin-4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153094 True 2236 lncRNA 0.45 3 32374648 32377402

Neighbor

gene id symbol gene type direction distance location
scnm1 scnm1 coding upstream 775 32370802 ~ 32373873 (+)
tnfaip8l2b LOC106605333 coding upstream 9301 32356928 ~ 32365347 (+)
LOC110487115 LOC106580947 coding upstream 25680 32332091 ~ 32348968 (+)
LOC110487062 LOC106605340 coding upstream 311262 32056519 ~ 32063386 (+)
LOC110534747 LOC106605338 coding upstream 347549 31987684 ~ 32027099 (+)
hormad1 hormad1 coding downstream 64844 32442246 ~ 32455246 (+)
onecutl LOC106605329 coding downstream 100248 32477650 ~ 32489444 (+)
lingo4b LOC106605327 coding downstream 148330 32525732 ~ 32543737 (+)
si:ch211-113g11.6 LOC106605326 coding downstream 173505 32550907 ~ 32568058 (+)
tlr18 LOC106580799 coding downstream 192038 32569440 ~ 32582549 (+)
G132926 NA non-coding upstream 47601 32326687 ~ 32327047 (+)
G132912 NA non-coding upstream 67791 32306531 ~ 32306857 (+)
G132671 NA non-coding upstream 282734 32091659 ~ 32091914 (+)
G132669 NA non-coding upstream 283495 32090768 ~ 32091153 (+)
G132468 NA non-coding upstream 303802 32068827 ~ 32070846 (+)
G132956 NA non-coding downstream 24940 32402342 ~ 32402615 (+)
G132957 NA non-coding downstream 25425 32402827 ~ 32403159 (+)
G132959 NA non-coding downstream 31121 32408523 ~ 32408936 (+)
G132960 NA non-coding downstream 31596 32408998 ~ 32409254 (+)
G132961 NA non-coding downstream 32016 32409418 ~ 32409658 (+)
G132342 LOC100136303 other upstream 487076 31834170 ~ 31887572 (+)
eaf1 LOC106581241 other upstream 1008326 31360408 ~ 31366322 (+)
LOC110534710 LOC106605356 other upstream 1081614 31262054 ~ 31294577 (+)
G131517 ccne2 other upstream 1624694 30748055 ~ 30749954 (+)
G131491 NA other upstream 1674025 30700182 ~ 30700623 (+)
G133473 LOC106605294 other downstream 790036 33167438 ~ 33169378 (+)
G133663 LOC106605282 other downstream 1119052 33496454 ~ 33497285 (+)
G133760 LOC106605274 other downstream 1436631 33814033 ~ 33814483 (+)
G134735 LOC100136012 other downstream 1585015 33962417 ~ 33962658 (+)
si:dkey-30e9.6 LOC106605205 other downstream 2310553 34687955 ~ 34692286 (+)

Expression


Co-expression Network