G133099


Basic Information

Item Value
gene id G133099
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 32398230 ~ 32399418 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU153295
ttgtgaagatataaaaactatgaaataacacatatgtaatcatgtagtaaccaaaaaaagtgttaaacaaatcaaaatatattttatattttagactcTTTAAAGCCACCCTTtgcagctttgcacgctcttggcattctctcaaccagcttcacctagaattattttccaacagttttgaaggagttcccacatatactgagcacttgctggctgcttttccttcactctgcagtccaactcatcccaaaccatctcaattgggttgaggtcgtgtgattgtggaggacaggtcatctgatgcagcactccatcactttcctccttggtcaaatagcccttacacagcctggaggtgtgttggatcattgtccttttgaaaacaaatgatagtcccccaaagtacaaaccagatgggatggcgtatcgctacagaatgctgtggtagccatgctggttaagggtgccttgaattctaaataaatcacagacagtgtcaccagcaaagcacccccacaccatcacacctcctctatgcttcatggtgggaaccacacatgcagagatcaaccgttcacctattctgcatctcacaaaaacacagcgggtggaaccaaaaatctcaaatttggactcatcagaccaaaggacagatttacaccggtctaatgtccattgattgtgtttcttagcccaagcaagtctgttcttcttatttgtgtccttaagtaatggtttctttgcagcaattcgaccatgaaggattgattcacgcagtctcctctgaacagttgatgttgagatatgtctgttacttgaactctgagaagcatttatttgggctgcaatttctgagcctggtaattctaatgaacttatcctctgcagcagaggtaactctgggtcttcctttcctgtggtggtcctcatgagagccagtttcatcatagcgcttcatggttttcgcgactgcacttgaagaaactttcaaagttcttgaaacgttcattattgactgactttcatatctatttgagctgttcttgccataatatggacttggtcttttaccaaatagggctatcttctgtctaCCAACCCTATcatgtcacaatacaactgatttgctcaaaaattccacaaattaacttttaacaaggcacacctgttaattgaaatgcattccact

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153295 True 1189 lncRNA 0.42 1 32398230 32399418

Neighbor

gene id symbol gene type direction distance location
LOC110487143 tmod4 coding downstream 10348 32374622 ~ 32387882 (-)
lysmd1 LOC106605332 coding downstream 27279 32368622 ~ 32370951 (-)
LOC110487106 LOC106605335 coding downstream 180060 32095531 ~ 32218170 (-)
LOC110487099 NA coding downstream 323094 32068818 ~ 32075136 (-)
LOC110487053 LOC106605337 coding downstream 341992 32027226 ~ 32056238 (-)
LOC110487180 mcl-1 coding upstream 28169 32427587 ~ 32429982 (-)
ensab ensa coding upstream 33049 32430455 ~ 32441999 (-)
LOC110487241 LOC106605328 coding upstream 90186 32489604 ~ 32497994 (-)
ctsk catk coding upstream 99385 32498803 ~ 32505857 (-)
rrnad1 cl026 coding upstream 193245 32592663 ~ 32597152 (-)
G133063 NA non-coding downstream 30856 32366689 ~ 32367374 (-)
G133085 NA non-coding downstream 47782 32350222 ~ 32350448 (-)
G133077 LOC106580947 non-coding downstream 59231 32338010 ~ 32338999 (-)
G133048 NA non-coding downstream 90968 32306942 ~ 32307262 (-)
G132631 NA non-coding downstream 352722 31998807 ~ 32045508 (-)
G133100 NA non-coding upstream 5955 32405373 ~ 32406017 (-)
G133101 NA non-coding upstream 7491 32406909 ~ 32408081 (-)
G133105 NA non-coding upstream 13581 32412999 ~ 32413340 (-)
G133061 NA non-coding upstream 24818 32424236 ~ 32425339 (-)
LOC110486999 prdm1 other downstream 749435 31631886 ~ 31648795 (-)
G132197 NA other downstream 855221 31536047 ~ 31543009 (-)
LOC110486868 LOC106605361 other downstream 1199418 31196917 ~ 31199241 (-)
LOC110486852 LOC106605360 other downstream 1201938 31192419 ~ 31196292 (-)
trnae-cuc LOC106605367 other downstream 1498666 30897026 ~ 30899564 (-)
LOC110514821 NA other upstream 339411 32738829 ~ 32756992 (-)
G134102 NA other upstream 348790 32748208 ~ 32788121 (-)
LOC110487618 LOC100380645 other upstream 813246 33208500 ~ 33225125 (-)
G134668 NA other upstream 1466070 33865488 ~ 33865937 (-)
G135575 NA other upstream 2204797 34604215 ~ 34604478 (-)

Expression


Co-expression Network