G134160 (LOC106605316)


Basic Information

Item Value
gene id G134160
gene name LOC106605316
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 32848453 ~ 32852110 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU154482
AAATACCATAAAACATACGCAAAAAGGGGAGGGTAAAGAAGGGACAAATGGATACTTTGGTACAATAACAAACACTTTTTGTAAAAGCAGTATAGAATTTGTAATAACATCAGTGCATACTTTATTTATGAAAATATACACAAATTGTATATCATTctccaaaaacaacaaaaaaAGCAGACTAGCCGAACACAATATATTAGCTATAATTTTTTCTTCAATTTCTATTTTATTTCTGTGTGATGTATATTCTTATTGATATTACATTTCATATGCATTTCCTATAATAGGATTCATTCTTTGTTTGTGTTATGCCCATGCATTGACATCTTTGTGTCTGGTCAGAAATAAATTGTCCTCACTTTACTATCTGTAGACTAAGTTTTGTACATTTGACAAAAAATTGCAGCATTGAACTGGTTATTATATTAAACTTGTTTACCACCTTTCATGATCTCATATGTACTAATATTACTACAGCCGTTTTGTTTTACGTCATAAATCGTGCAATTTTAGTACACCCTTTGAAGAAAAAACTAAAGaaaaaatgaaaacaaaacaaaaatatatttatatataataaaataaaattcaaATAAAACAAGATTCCTAACCTACACAAAACCGCAAAAAATAAAATTGCCTTTTCTATATCATCATTACAATTACCATCGATGGTCACAATAATGATAATATTAACAGTAATAATAGCAATTATCATAGAACAATTATAATAAAAACAGACGATAGAACTGTCACCAGCACAAATTAACACTGGAAAGTGAGATTCTCTAAACATCATTCATTATATATGGGGAATATGGGGGCGCAGGTTAACTATTGTCATGACAATTGTCTTTTCATTTGTGATTACAGTGACCCTTAGTGTTGTTCTGGGATAATGTCAGGGCTTTATACAACACCTCGATTGGCCAGCGTCCATAGTACTAACCAACCCCATCGTCTGCTTCCGCTAGTCACCATTTAGTCTAGGTATGAAACATCGCTTCATGGCATGTGGCCCTATTCAAGACATGGCTACcattattataaaaaaaacatCAGGGTCAATGTTTTGTTCAAAGCTCAGGACACAACAGTCTTACAGTCTAAGGGTGTGTGAATATACCGGCAGGcgtgatcactctctctctctgccatccacCTCTAGACGATCGTCTAGACTCCTGACGAGTCAGTCTGCACAATCCCTACGGCAACAACTACGGTATAAAACGATAAAGAGCCAATGGGAGGTCATTTGAACCTGTTCTGGACGGAGTGCAGAGTATATGCGAGTAcggtgtttgagtgtgtggagcAATGAGGCATTTTGGCAGAAAATTGATAGTGGCAGGGGTCAAATGAGTGTGAGATGGACTTGTCTTAAGTCACTGGTAGGGAGCGGTCGAGTTTACACTACGGTTCAATGAGTGAAATGCTGTAATTACTTCATGTGGCCAGGGAACTCTCCTCTAACAGAAAGCACAGGGAATACTTGTCTGGCTAAtgtgtgaaaatgtgtttgtgtgtgttgaatGAGTTTGACGTGCCTGAGGACATGCAGACATGACTGTCCCTTTCTGGAGGACACCTGACTTTTAAAGAGAGGGGGCATTTTGGGGGCTTGGGGGGAGGAAGGGGTTAAAGTGCGCTCCATCAGAGTACTAACCACTGCTCACTCAAACAGTCCAATCCACTGCTACTTCCTTTTCTGTCCCTCTAGCACCCTCACCTGGCTTTGCAACCTAGTACACTTATGTACACACATAAATAGAAAGACCCGATCCACTGAGAATCAACACATTAGCTTTTAGGGATATCCTGCTGAACATATGTGAACATATATTTCTATATACAATCCCTGTCGTCTATCGTTTTCTCTGCATCGTATGCAGTTCATCACTTACTCTCAAAATCTGCTATCGCTGctgtttaaatatatatttatatgctCTATATGTTTACCCTCAAAAAACGATGTCCCTGCTATACAAAAGCCATACAGAAGGAAACAGAACAAATTGTTTATATACACAGTTCTTCACTTTTTCTCCCAGTTTACATCTCCTATTCAGAGCCTTCTGAAACACAGGCattgtttaacaaaaatatttttgtgtgtgtgtgtgttgtggaGGCATGGGTGTGAGGTCAGCATTTACTGTACATACGGTAAAAGGGTGTGGGATGGTGCatctctccccttcactctctTGTTCTACACATCTATGTGACCCAGGTGTCCAGTCTCATTCTTTTCACGTTGGCCCCCTCCTGCTCCTGCTGCTCCTGAGTGGACGAGGGCCTCAGGAGCCCCATGGCCGAGGAGGCCCCTCCCTGGTGGTGGAAGTCCTGGGCCTGCCCCTGGGCCCCATTGTCCCGGTCACCCTCGTAGGAGCTGCCGTTGCTGCTCAGGCTGCCGACGGGTGAGCGGCCCTGCAGGGTGGACGGCTCCAGGCGCAGGGCCCCTGGGTACTGGCCTGACATAGGGGCCCCTGTGATGGTCACTAGGCCCCCTCCTCCGCCACCCCCAGCTGTTGAGCATGGGGTGCTGCGGTCGCGGTTGGGCGACACGGGCTCCGACTTGATGCTGATGTTGGGGTTGGTGTTAATCGTCAGCATGGTGCCCTGAGGTAAGTGGCCCACCGGC

Function

NR:

description
myocyte-specific enhancer factor 2D homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU154482 True 2653 lncRNA 0.46 3 32848453 32852110

Neighbor

gene id symbol gene type direction distance location
LOC110487362 NA coding downstream 72932 32770410 ~ 32775521 (-)
LOC110514821 NA coding downstream 91587 32738829 ~ 32756992 (-)
LOC110487305 LOC106605321 coding downstream 207908 32632979 ~ 32640545 (-)
rrnad1 cl026 coding downstream 251301 32592663 ~ 32597152 (-)
ctsk catk coding downstream 342596 32498803 ~ 32505857 (-)
LOC110487370 nes coding upstream 3655 32855765 ~ 32868211 (-)
LOC110487437 LOC105030512 coding upstream 32298 32853454 ~ 32889385 (-)
LOC110487461 LOC106605311 coding upstream 86937 32939047 ~ 32968489 (-)
LOC110487493 LOC106580659 coding upstream 150019 33002129 ~ 33010958 (-)
LOC110487486 raa2a coding upstream 160257 33012367 ~ 33018172 (-)
G134161 NA non-coding downstream 276 32847662 ~ 32848177 (-)
G134027 NA non-coding downstream 163730 32682610 ~ 32684723 (-)
G133992 NA non-coding downstream 300746 32547489 ~ 32547707 (-)
G134182 NA non-coding upstream 39605 32891715 ~ 32891916 (-)
G134253 NA non-coding upstream 128946 32981056 ~ 32982279 (-)
G134254 NA non-coding upstream 129326 32981436 ~ 32981888 (-)
G134229 NA non-coding upstream 142267 32994377 ~ 33001917 (-)
G134102 NA other downstream 60332 32748208 ~ 32788121 (-)
LOC110486999 prdm1 other downstream 1199658 31631886 ~ 31648795 (-)
G132197 NA other downstream 1305444 31536047 ~ 31543009 (-)
LOC110486868 LOC106605361 other downstream 1649641 31196917 ~ 31199241 (-)
LOC110487618 LOC100380645 other upstream 360554 33208500 ~ 33225125 (-)
G134668 NA other upstream 1013378 33865488 ~ 33865937 (-)
G135575 NA other upstream 1752105 34604215 ~ 34604478 (-)
G136399 psmc4 other upstream 2454257 35306367 ~ 35307729 (-)
drd2l LOC106582624 other upstream 2822188 35674291 ~ 35700846 (-)

Expression


Co-expression Network