G133272


Basic Information

Item Value
gene id G133272
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33011062 ~ 33012909 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU153494
CATCGCCTCTTGGGTGATGTCTTCAGTCTCAAGCCTTCCAGGTATGCTGATGCTGCGTTCAGAACAACTGGGGACTCGGATctcggaaatctccgacttcggatatcagtgcgttcaagacaactgggaactactggcacacagctcggacacccatgcattccccacaagacatgcaaacagaggtctcttcacagtcgccaagtccagaacagactatgggaggcgcacagtaatatagagccatgactacatggaactctattccacatcaagtaactcaggtcatccaactcggaattccaggTCGGGAACTCGGACCTCTTTCTACAGCTCCGACGTCAGGATTTGACCACATTATTTCAAAGTTCCCagctgtcttgaaagcaccatgaccCTCAGGTTTAATGGATCCTTAGCACAGtatcataatgacatcacagcacTGCAGCACTTGAACTGCAGGCTATGCTTATGCAGCTAAATAAATGCAATTAATATATACTTTTGTGTCTGGATGTAGGcctatttattgtatttttttgcaCCTTGGGTCTGAAAAAAAAGCACTTTACAAATTAAATTATTATAGGTTTAGCTAAGGACGACTTATGAGATCAATATGGTCAATGTCTGATCATTAATGGGATATCTTCATTATAATCAAAAGTAATCCCCACAGAtggaaaatgtaggctattcCATTATGTTCTTGTCTATCAGTTGCCATTTGTGTATTGTACTTATTGCCATTTTTAGATGTATTATTATGATGAATTGGCTATTATTGTGAAGGAAATCAAATGTAAAAACTGATAATTATAAGGCAAGTAATAATGAACCTGGCATTTGAGTGCAAAAAAATATTCCTGTATTGTTGTAAAATCACCCCACAATAAGAATACGCCGTTTTGGAACAATTAAAGCAAAAGATAAATTACATGTAACTGTACTTTAAGTAAACAGAGCACAAACAACAGTGACAGCAAATTTAATTAATCAAGCTTTGTGTAAAAACGTGGTTTTGGCACTTGTTGTCCAACCTCAGTCACTAAAAATGCAAATATTCTGTACATCAGTTGACTACCTTTAAAAATAAAATCATCCTAAGCAACATTGAATTTTTGAAGTTTACACAAAAATGCTGTTTgatatatttttatattcaaatgatTGCTGGATTCTTTGGGGGGGAAATGTACCCCCAGCCATGTACATACACATTACATCATCTTTAGGAATGGAAAACTCATTCTGTCTGCCAACATGTAACTATGTCACATCAGAGTGGTCTTGCTCAGCATCATTCTTTTCAATCAGGCTTGCACCATTTGGGCACACTAACTAGAGGAAGATGGAGTGCTCTATTCCACATGAGGGGGTGGTTTGTCCCATCAGAGGTTCCTACAGCAGGGCTTCTTCTCTTCAGGGTCGCCTGCAGCTCTGGGGACGGGGCTGGCCAGAGACACGGCACTAATGGACCCCCGGGTCACTTCTTTACTGCTCACCTTCCTGTGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153494 True 1518 lncRNA 0.41 2 33011062 33012909

Neighbor

gene id symbol gene type direction distance location
LOC110487479 LOC106605309 coding upstream 9056 32988834 ~ 33002008 (+)
LOC110487447 LOC106605310 coding upstream 71252 32896415 ~ 32939810 (+)
LOC110487411 LOC106605313 coding upstream 129004 32877901 ~ 32882058 (+)
LOC110487428 NA coding upstream 135212 32873188 ~ 32875850 (+)
LOC110487398 LOC106605316 coding upstream 158919 32775600 ~ 32852143 (+)
LOC110487536 NA coding downstream 15964 33028873 ~ 33045721 (+)
LOC110487571 m4a8a coding downstream 17401 33030310 ~ 33033853 (+)
tmem176l.1 m4a8a coding downstream 32923 33045832 ~ 33049288 (+)
LOC110487588 NA coding downstream 117408 33130317 ~ 33160062 (+)
LOC110487649 LOC106581815 coding downstream 303381 33316290 ~ 33321834 (+)
G133374 NA non-coding upstream 29034 32981182 ~ 32982028 (+)
G133324 NA non-coding upstream 166528 32844251 ~ 32844534 (+)
isg20l2 isg20l2 non-coding upstream 405463 32597101 ~ 32605620 (+)
G133185 NA non-coding upstream 465071 32545778 ~ 32545991 (+)
G133415 NA non-coding downstream 68778 33081687 ~ 33081982 (+)
G133417 NA non-coding downstream 70439 33083348 ~ 33083575 (+)
G133432 LOC106605295 non-coding downstream 90021 33102930 ~ 33135626 (+)
G133439 NA non-coding downstream 131465 33144374 ~ 33173378 (+)
G132342 LOC100136303 other upstream 1123490 31834170 ~ 31887572 (+)
eaf1 LOC106581241 other upstream 1644740 31360408 ~ 31366322 (+)
LOC110534710 LOC106605356 other upstream 1718028 31262054 ~ 31294577 (+)
G131517 ccne2 other upstream 2261108 30748055 ~ 30749954 (+)
G131491 NA other upstream 2310439 30700182 ~ 30700623 (+)
G133473 LOC106605294 other downstream 154529 33167438 ~ 33169378 (+)
G133663 LOC106605282 other downstream 483545 33496454 ~ 33497285 (+)
G133760 LOC106605274 other downstream 801124 33814033 ~ 33814483 (+)
G134735 LOC100136012 other downstream 949508 33962417 ~ 33962658 (+)
si:dkey-30e9.6 LOC106605205 other downstream 1675046 34687955 ~ 34692286 (+)

Expression


Co-expression Network