G134227 (m4a8a)


Basic Information

Item Value
gene id G134227
gene name m4a8a
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33031249 ~ 33049593 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU154581
TTCAGAATATCTTTTTTTAATATACAACAGTCAATTCAGTAATTAACTTGATATAGTCCCCTTTATAACTGTCCTTTCAGTTTTGGAAAAAAGACAAATACAAAAAGCATGAAGACATACAATCAGTGTCAGTTGTCATTTACACAAAGCAAAGTCACAGTAGGCGTTACAGTACATTAAGTAAGTGAACTATAtgtactacatactgtatgtataacaACAAATGTGTGGGTGTGGAGGGGGTTGTATGATGATCCATTTATGTAGAATACATTTGAttctatttatttatgtattccaTGTGGAAGCAGCACCACTCTTTAATCGTCCATGACAAATTTCCCCACGTGGTCAATAAAGtatatcagatcagatcagtgctCTTTAAGCTGCAGGGTTAGTGGTGACCTCCTCCAGCAGAGGCTTATACTGCTCCAGGTCCCGGAAGTTCTGCAACATATCAGAGCAAAGTTACACATTACTTGGCAGGACACAACAAACATTACcttggttgtgtgtctgtgtgcatctaCATATCCGTATTCTACTTCCATTTGTATGGCCGTTGTATTCGCTATGTTCAAGGGTTCTCTGTTCATACCTCTTTTCCCTCCTTTCCATTCTTGTACAAAGCCTTGAGACCCAACACCGCAGAGCTTATGGTGACACAAAGCTGAAGAACTGCAAGGACGATGAGCACAATGTCCAAGGCATTCATCAACATCTAATGGTAGAACAAACACATGGAGGAGGATTTGAACATATTGATAGTTGACTGGATTGTTTAGCAAGATAGTGGTGTTGGTGAACACCGGAAAatacagaaacagactggcataCCAGCTATTAGAATGTGCTTTAAACATGGTACCCACTATCTCTGTTTATGGACACACATGTTCATTGTTAAATTAAGCAGTTTGATCCATCTAATCAAATGTTCATATATTTTACTTAGAACAGACCAGGGACACCTTCCTCACATGATGAATATCATTAAAAAAACTTCATTGTAAAGCACTCACCTGTGCAATCTGCTTGGCATCTTTGCATTTCGCCAAGAGTATATCCCTCTCCGGATCACTGGGGGGTTTTGTCACCTGGCCACCATAGTAGTCATCTCGCCAGTTGTAGTGGTCATCATTGCAAATCCACCAGAAATGGTAGTTTGCCAGGTCTACAGCATACAGCACAATTCCAGTAATGGCCAGAGCAGCACCTGACAGGTTCATCAACACCTGTGCAATCTGCTTGGCATCTTTGCATTTCGCCAAGAGTATATCCCTCTCCGGATCACTGGGGGGTTTTGTCACCTGGCCACCATAGTAGTCATCTCGCCAGTTGTAGTGGTCATCATTGCAAATCCACCAGAAATGGTAGTTTGCCAGGTCTACAGCATACAGCACAATTCCAGTAATGGCCAGAGCAGCACCTGACAGGTTCATCAACACATTGATGCCCACCAAGCAGGGACTGGGGAACTTCTCAGCCAAGATACACATGATGCCAACTGCTATAAACACACCACCAAGCCAATAAGGAACCCCATTCCATCGCAGTAAGCTAGAATAATCAGTGCTAACAAGGATTGTTCCCAAGCCAATGTTGAGAACTCCCACCATGATCTGTATAGTCCCCAGAGCTGACTGGGAACTTGATTGGAGCCTCCGCAGTCCCTGGGACACAGAGCATGCTGGGCTGTAGCACAAGGTCCCAAGTATTTGACACAGCAGGGGCCAACTGCTTCCTTCTTTAGAGTTCACTGTAAATACAGTCACCCCTCCACCTTTGGTCACAGTCACTGACATGCTGGCCACTCTTGGTTACACAGCTCTAAAACAAAAGGCAGAACAATCATCTTAATGTTAAAATAAGTGTATGCCTTATACTGTAAGTCATGATGTTAAAAGGTGCACATTCATTCCAATACAATTTGATGAAGTCTGTGTTGTATCTGGAGGATACAACTTGTTTTTAAAGGACAAAACTATCCATTTCGTTTGAGGATGTATTGCATTGTACAGCACTCTGAATATGCCCTAAATAAGGGCTATCTTACTGTCACTGCTACAGTGTGTATTGGGTCATAGTGACAAACAGGTTCCATCCCATGTGGACTACATTAAAGGGAATCTACCCATTATTTTGTTGCTCTGCTTTACTAAATTGCAGTTATCTCTTGCCTCATTGAAAGATGATAGGAGATAGGGCATGTCATGAAGTGTGGTGATGAGTGGGTTTAGAGCTTCTGCGACACATGAAGGAAGTGCACAACA
>TU154578
TTCAGAATATCTTTTTTTAATATACAACAGTCAATTCAGTAATTAACTTGATATAGTCCCCTTTATAACTGTCCTTTCAGTTTTGGAAAAAAGACAAATACAAAAAGCATGAAGACATACAATCAGTGTCAGTTGTCATTTACACAAAGCAAAGTCACAGTAGGCGTTACAGTACATTAAGTAAGTGAACTATAtgtactacatactgtatgtataacaACAAATGTGTGGGTGTGGAGGGGGTTGTATGATGATCCATTTATGTAGAATACATTTGAttctatttatttatgtattccaTGTGGAAGCAGCACCACTCTTTAATCGTCCATGACAAATTTCCCCACGTGGTCAATAAAGtatatcagatcagatcagtgctCTTTAAGCTGCAGGGTTAGTGGTGACCTCCTCCAGCAGAGGCTTATACTGCTCCAGGTCCCGGAAGTTCTCTTTAATCGTCCATGACAAATTTCCCCACGTGGTCAATAAAGtatatcagatcagatcagatcagtgctCTTTAAGCTGCAGGGTTAGTGGTGACCTCCTCCAGCAGAGGCTTATACTGCTCCAGGTCCCGGAAGTTCTGCAACATATCAGAGCAAAGTTACACATTACTTGGCAGG
>TU154580
tttctatgggttatagcagtaaaggccaaattcaatgtttcatcaaatatattttttatatacctACAGGGAAGCTCAAATTCAAATGGCTAAATTATCAATTtaatgaccatcttaaaacaattccatatattaACTTAGTAGATATTGCGACCTATGGGCTTAGACCTTAAGacattgttttctttattttggcagttacctgtatatgccTCCAAGAAACACCATTGTTTGCTCATAGGTTATGTTTGTATGGGAATGACTGCCACCTGATGTCAATGTTTAGTAAAACTGTTTTTAAACTTGAGCTAAGAGagtttgttgtttattttttttgaagggggggggggggggggggggggacaaccgAATAAAAGATAGTAAGAAATTATCAAAATGCTGAAAAAAATTAATATACAACAGTCAATTCAGTAATTAACTTGATATAGTCCCCTTTATAACTGTCCTTTCAGTTTTGTAAAAAAGACAAATACAAAAAGCATGAAGACATACAATCAGTGTCAGTTGTCATTTACACAAAGCAAAGTCACAGTAGACGTTACAGTACATTAAGTAAGTGAACTATAtgtactacatactgtatgtataacaACAAATGTGTGGGTGTGGAGGGGGTTGTATGATGATCCATTTATGTAGAATACATTTTAttctatttatttatgtattccaTGTGGAAGCAGCACCACTCTTTAATCGTCCATGACAAATTTCCCCACGTGGTCAATAAAGtatatcagatcagatcagatcagtgctCTTTAAGCTGCAGGGTTAGTGGTGACCTCCTCCAGCAGAGGCTTATACTGCTCCAGGTCCCGGAAGTTCTGCAACATATCAGAGCAAAGTTACACATTACTTGGCAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU154581 False 2276 lncRNA 0.45 5 33031249 33049288
TU154578 False 629 lncRNA 0.39 2 33033375 33049288
TU154580 True 888 lncRNA 0.45 2 33033375 33049593

Neighbor

gene id symbol gene type direction distance location
LOC110487525 LOC106605242 coding downstream 4112 33020821 ~ 33027137 (-)
LOC110487507 LOC106580651 coding downstream 10952 33017135 ~ 33020297 (-)
LOC110487486 raa2a coding downstream 13077 33012367 ~ 33018172 (-)
LOC110487493 LOC106580659 coding downstream 20291 33002129 ~ 33010958 (-)
LOC110487461 LOC106605311 coding downstream 62760 32939047 ~ 32968489 (-)
LOC110487583 LOC106605302 coding upstream 7412 33057005 ~ 33074880 (-)
LOC118936288 LOC106605301 coding upstream 25690 33075283 ~ 33080028 (-)
LOC110487585 LOC106605295 coding upstream 84545 33134138 ~ 33137978 (-)
LOC110487587 LOC106605297 coding upstream 94781 33144374 ~ 33173493 (-)
LOC110487594 LOC106605294 coding upstream 115385 33164978 ~ 33172969 (-)
G134229 NA non-coding downstream 29332 32994377 ~ 33001917 (-)
G134253 NA non-coding downstream 48970 32981056 ~ 32982279 (-)
G134254 NA non-coding downstream 49361 32981436 ~ 32981888 (-)
G134182 NA non-coding downstream 139333 32891715 ~ 32891916 (-)
LOC110487437 LOC105030512 non-coding downstream 141900 32853454 ~ 32889385 (-)
G134231 NA non-coding upstream 35342 33084935 ~ 33106505 (-)
G134361 NA non-coding upstream 181403 33230996 ~ 33231201 (-)
G134364 NA non-coding upstream 186372 33235965 ~ 33236189 (-)
G134367 NA non-coding upstream 200327 33249920 ~ 33250188 (-)
G134102 NA other downstream 243128 32748208 ~ 32788121 (-)
LOC110514821 NA other downstream 279671 32738829 ~ 32756992 (-)
LOC110486999 prdm1 other downstream 1382454 31631886 ~ 31648795 (-)
G132197 NA other downstream 1488240 31536047 ~ 31543009 (-)
LOC110486868 LOC106605361 other downstream 1832437 31196917 ~ 31199241 (-)
LOC110487618 LOC100380645 other upstream 163071 33208500 ~ 33225125 (-)
G134668 NA other upstream 815895 33865488 ~ 33865937 (-)
G135575 NA other upstream 1554622 34604215 ~ 34604478 (-)
G136399 psmc4 other upstream 2256774 35306367 ~ 35307729 (-)
drd2l LOC106582624 other upstream 2624705 35674291 ~ 35700846 (-)

Expression


Co-expression Network