G133432 (LOC106605295)


Basic Information

Item Value
gene id G133432
gene name LOC106605295
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33102930 ~ 33135626 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU153665
aaaacacataaatcacccatgtcacaccctggcctaaccaaaataataaagaaaacatagAATACTAaagccagggcgtgacacaacaAGAAATCTCTTAACCCCTCTTTTCCTCACACATCCCATAGACACATTAAGAGAGGGTGCATGGAAGACAGGAGGATGATTAAAAAAGGTCTATTTCCAACTGCACTGTATATTACAGACTGCACTCAATCAATTTTGACAGGCTTGATTGACGATAGTGTAGCACTGAGGCTAAAGCCCTGGCAGAACCATATAGCTACTCCACCGGCCAAGAAATGATGGCCGTTTCCACCGCTCTCCACCTCCAACACCGATAATGTGTGATTCCATCATGCTGATCCAAGCACTTTGGAGCTCGTCTTCAAGATATTAAAAGGTTATTCATGGACTATCAAACCAAAGCAGTGGTCAAGAAATGCTGTAGGGGCCCCGGTGAGTGCAGGTGCACTAGCTTGCTTTAATGGCAATAGACGTCAACATGTTTACACAAGACAGgcaagacacacatacacagtatacATCCAATAACAGCTGATTGTAAAGCATAATGCCAAATGTTGTTTTTATTATGACTGACTTAGCAGGAATTAGAAAGATGAGTCAATTAAACATCACTTCACATACATGCTGTAACAACTGGCATAAGTAATCTGTTCACAAATAGGCACAGCTTGGGAGGTAATAACATTAAAGTTCTGCTACTGCAGCATGCCTGCTATGGGTTCAGAAGCAAGGGGTTTGAGTGTGTTGTGAAGACAAGGCACAGTAGAGAACACTGCCAAGTTGTTTTCACGGATGGCAAAATAGCTTCCATGCTCTCTTTCATTGTAATGTAGGTCAGCCTGTGTCATAGAGAGACAAAATGAGAGCACAGCTCAGCAGTTGCAATCTCAGCAAAATGATCTCTGTGGAATTGTGGGCAGCAAGGTTATTCCTATTGGCAGTAGGGTAAGATGCATTGAGTTAAGCTATTTAACTACGAGAGAGTATTGAGTAAAATGTGGTCATAAGTTATGGTATGGGTTCGTCACTTATAATAAAATGCATATACAGTTCATTAAGTACTCTGCGAACACTGGACTATTGTAACACTGCCTCCAATTAGCAAAAGATTCAGATTTCTATACAGTGAATCTAATTGCCACCAAAGCTACTTGCTATACACAGTGCATAGTATTATGTAATGGCTAAGACAAACTGCATGGCGTATTCACAAAACCTCATCACCATTTACCATAATTTCCCACACATCCTCTTTGAGTCGGTCAATTCAGAATTTAGAATAACCCTTCAGGTTGATTACATAATGGTCCCTATTTGTCTGACTTGTTGCACCTCTATCAGCATCACTCCGAGTGTATGCACAGCGCCACGTTCTTGTGCCTCTCCCAGTAGTGGCAGTCCTCAGGGAAGCTCCAGGTGGCCTCACTCTCCTTATGGTGACTGACAGCATGCACCACAAACCCTGCAAGCTGCTTCTCTAGGACCCCCACCACGGCCTGGGCATCACCCTTCTTCCCCGGCCCCTCCATCAGTTGCCGGATGCAGTCGCGGGGCACTGGTTGGGGACTGGTGCTGTAGGAAACCACCAGGTTGGTATCGTTCACCTGCAGCACCTCAAACCAGTTCTGACCGGCCATGTGTTGGAAGTGGTCCCCGGCACGCCAGTTCCGATAGCTGCTGCCAGAGTGGTTGACCACTCGGACCGACCAGCTCACCCAGTCGTACTTCCTGGTGAGAAATTCCTGTACTTCCTGAGCCGTGTCCTGAAGATTCCGTTCCTCTTTTTCCTGGAGAAGACGCTGGGCGTCAAGGCAGGCCTGATCAGGGAAGGCTGCTACGCAGGCCTCAATGCATGCCTTCATCTTTAATTCCACTCTCTCGATTTCTCTGCTCCAGACCTGGATGGTTTCTTGCTCCTCATCGGGGCCCTTGGTGAGGGCACAGTGGCCCAGCAGGGCAATCAGGCCCAGGCAGAAGAGCTCCTTCATCCTCACACAGAAGTCCTCCAGTAGGCGCCTGTTCCTCGCCT
>TU153666
aaaacacataaatcacccatgtcacaccctggcctaaccaaaataataaagaaaacatagAATACTAaagccagggcgtgacacaacaAGAAATCTCTTAACCCCTCTTTTCCTCACACATCCCATAGACACATTAAGAGAGGGTGCATGGAAGACAGGAGGATGATTAAAAAAGGTCTATTTCCAACTGCACTGTATATTACAGACTGCACTCAATCAATTTTGACAGGCTTGATTGACGATAGTGTAGCACTGAGGCTAAAGCCCTGGCAGAACCATATAGCTACTCCACCGGCCAAGAAATGATGGCCGTTTCCACCGCTCTCCACCTCCAACACCGATAATGTGTGATTCCATCATGCTGATCCAAGCACTTTGGAGCTCGTCTTCAAGATATTAAAAGGTTATTCATGGACTATCAAACCAAAGCAGTGGTCAAGAAATGCTGTAGGGGCCCCGGTGAGTGCAGGTGCACTAGCTTGCTTTAATGGCAATAGACGTCAACATGTTTACACAAGACAGgcaagacacacatacacagtatacATCCAATAACAGCTGATTGTAAAGCATAATGCCAAATGTTGTTTTTATTATGACTGACTTAGCAGGAATTAGAAAGATGAGTCAATTAAACATCACTTCACATACATGCTGTAACAACTGGCATAAGTAATCTGTTCACAAATAGGCACAGCTTGGGAGGTAATAACATTAAAGTTCTGCTACTGCAGCATGCCTGCTATGGGTTCAGAAGCAAGGGGTTTGAGTGTGTTGTGAAGACAAGGCACAGTAGAGAACACTGCCAAGTTGTTTTCACGGATGGCAAAATAGCTTCCATGCTCTCTTTCATTGTAATGTAGGTCAGCCTGTGTCATAGAGAGACAAAATGAGAGCACAGCTCAGCAGTTGCAATCTCAGCAAAATGATCTCTGTGGAATTGTGGGCAGCAAGGTTATTCCTATTGGCAGTAGGGTAAGATGCATTGAGTTAAGCTATTTAACTACGAGAGAGTATTGAGTAAAATGTGGTCATAAGTTATGGTATGGGTTGGATACTTATAATAAAATGCATATACAGTTCATTAAGTACTCTGCGAACACTGGACTATTGTAACACTGCCTCCAATTAGCAAAAGATTCAGATTTCTATACAGTGAATCTAATTGCCACCAAAGCTACTTGCTATACACAGTGCATAGTATTATGTAATGGCTAAGACAAACTGCATGGCGTATTCACAAAACCTCATCACCATTTACCATAATTTCCCACACATCCTCTTTGAGTCGGTCAATTCAGAATTTAGAATAACCCTTCAGGTTGATTACATAATGGTCCCTATTTGTCTGACTTGTTGCACCTCTATCAGCATCACTCCGAGTGTATGCACAGCGCCACGTTCTTGTGCCTCTCCCAGTAGTGGCAGTCCTCAGGGAAGCTCCAGGTGGCCTCACTCTCCTTATGGTGACTGACAGCATGCACCACAAACCCTGCAAGCTGCTTCTCTAGGACCCCCACCACGGCCTGGGCATCACCCTTCTTCCCCGGCCCCTCCATCAGTTGCCGGATGCAGTCGCGGGGCACTGGTTGGGGACTGGTGCTGTAGGAAACCACCAGGTTGGTATCGTTCACCTGCAGCACCTCAAACCAGTTCTGACCGGCCATGTGTTGGAAGTGGTCCCCGGCACGCCAGTTCCGATAGCTGCTGCCAGAGTGGTTGACCACTCGGACCGACCAGCTCACCCAGTCGTACTTCCTGGTGAGAAATTCCTGTACTTCCTGAGCCGTGTCCTGAAGATTCCGTTCCTCTTTTTCCTGGAGAAGACGCTGGGCGTCAAGGCAGGCCTGATCAGGGAAGGCTGCTACGCAGGCCTCAATGCATGCCTTCATCTTTAATTCCACTCTCTCGATTTCTCTGCTCCAGACCTGGATGGTTTCTTGCTCCTCATCGGGGCCCTTGGTGAGGGCACAGTGGCCCAGCAGGGCAATCAGGCCCAGGCAGAAGAGCTCCTTCATCCTCACACAGAAGTCCTCCAGTAGGCGCCTGTTCCTCGCCT
>TU153668
aaaacacataaatcacccatgtcacaccctggcctaaccaaaataataaagaaaacatagAATACTAaagccagggcgtgacacaacaAGAAATCTCTTAACCCCTCTTTTCCTCACACATCCCATAGACACATTAAGAGAGGGTGCATGGAAGACAGGAGGATGATTAAAAAAGGTCTATTTCCAACTGCACTGTATATTACAGACTGCACTCAATCAATTTTGACAGGCTTGATTGACGATAGTGTAGCACTGAGGCTAAAGCCCTGGCAGAACCATATAGCTACTCCACCGGCCAAGAAATGATGGCCGTTTCCACCGCTCTCCACCTCCAACACCGATAATGTGTGATTCCATCATGCTGATCCAAGCACTTTGGAGCTCGTCTTCAAGATATTAAAAGGTTATTCATGGACTATCAAACCAAAGCAGTGGTCAAGAAATGCTGTAGGGGCCCCGGTGAGTGCAGGTGCACTAGCTTGCTTTAATGGCAATAGACGTCAACATGTTTACACAAGACAGgcaagacacacatacacagtatacATCCAATAACAGCTAATGTGTTGCCGTTTATTGTCACAAAGCACAATGACATATTTAGAATTTGGATGTTGTTTTTATTATGACTGAATTAGTAGGAATTAGAAAGATTTGTCAATTAAACATCACTTCACATACATGCTGTAACAACTGGCGTAAGTAATCTGTTCACAAATAGGCACAGCTCGGGAGGTAATACCATTAAAGTTCTGCTACTGCAGCATGCCTGCTATGGGTTCAGAAGCAAGGGGTTTGAGTGTGTTGTGAAGACAAAGCACAGTAGAGAACACTGCCAAGTTGTTTTCACGGATGGCAAAATAGCTTCCATGCTCTCTTTCATTGTAATGTAGGTCAGCCTGTGTCGTAGAGAGACAAAATGAGAGCACAGCTCAGCAGTTGCAATCTCAGCAAAATGATCTCTGTGGAATTGTGGGCAGCAAGGTTATTCCTATTGGCAGTAGGGTAAGATGCATTGAGTTAAGCTATTTAACTACTAGAGAGTATTGAGTAAAATGTGGTCATAAGTTATGGTAGGGGTTCGTCACTTATAATAAAATGCATATACAGTTCATTAAGTACTCTGCGAACACTGGACTATTGTAACACTGCCTCCAATTAGCAAAAGATTCAGATTTCTATACAGTGAATCTAATTGCCACCAAAGCTACTTGCTATACACAGTGCATAGTATTATGTAATGGCTAAGACAAACTGCATGGCGTATTCACAAAACCTCATCACCATTTACCATAATTTCCCACACATCCTCTTTGAGTCGGTCAATTCAGAATTTAGAATAACCCTTCAGGTTGATTACATAATGGTCCCTATTTGTCTGACTTGTTGCACCTCTATCAGCATCACTCCGAGTGTATGCACAGCGCCACGTTCTTGTGCCTCTCCCAGTAGTGGCAGTCCTCAGGGAAGCTCCAGGTGGCCTCACTCTCCTTATGGTGACTGACAGCATGCACCACAAACCCTGCAAGCTGCTTCTCTAGGACCCCCACCACGGCCTGGGCATCACCCTTCTTCCCCGGCCCCTCCATCAGTTGCCGGATGCAGTCGCGGGGCACTGGTTGGGGACTGGTGCTGTAGGAAACCACCAGGTTGGTATCGTTCACCTGCAGCACCTCAAACCAGTTCTGACCGGCCATGTGTTGGAAGTGGTCCCCGGCACGCCAGTTCCGATAGCTGCTGCCAGAGTGGTTGACCACTCGGACCGACCAGCTCACCCAGTCGTACTTCCTGGTGAGAAATTCCTGTACTTCCTGAGCCGTGTCCTGAAGATTCCGTTCCTCTTTTTCCTGGAGAAGACGCTGGGCGTCAAGGCAGGCCTGATCAGGGAAGGCTGCTACGCAGGCCTCAATGCATGCCTTCATCTTTAATTCCACTCTCTCGATTTCTCTGCTCCAGACCTGGATGGTTTCTTGCTCCTCATCGGGGCCCTTGGTGAGGGCACAGTGGCCCAGCAGGGCAATCAGGCCCAGGCAGAAGAGCTCCTTCATCCTCACACAGAAGTCCTCCAGTAGGCGCCTGTTCCTCGCCT

Function

NR:

description
SE-cephalotoxin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153665 False 2059 lncRNA 0.47 2 33102930 33135626
TU153666 False 2059 lncRNA 0.47 2 33102930 33135626
TU153668 True 2089 lncRNA 0.47 2 33102930 33135626

Neighbor

gene id symbol gene type direction distance location
tmem176l.1 m4a8a coding upstream 53642 33045832 ~ 33049288 (+)
LOC110487536 NA coding upstream 57209 33028873 ~ 33045721 (+)
LOC110487571 m4a8a coding upstream 69077 33030310 ~ 33033853 (+)
LOC110487479 LOC106605309 coding upstream 100924 32988834 ~ 33002008 (+)
LOC110487447 LOC106605310 coding upstream 163120 32896415 ~ 32939810 (+)
LOC110487649 LOC106581815 coding downstream 180664 33316290 ~ 33321834 (+)
LOC110487688 LOC106605287 coding downstream 271183 33406809 ~ 33408519 (+)
ntrk1 LOC106605284 coding downstream 299072 33434698 ~ 33460997 (+)
LOC118939517 NA coding downstream 395964 33531590 ~ 33540695 (+)
LOC110487797 LOC106605278 coding downstream 532517 33668143 ~ 33694941 (+)
G133417 NA non-coding upstream 19355 33083348 ~ 33083575 (+)
G133415 NA non-coding upstream 20948 33081687 ~ 33081982 (+)
G133272 NA non-coding upstream 90021 33011062 ~ 33012909 (+)
G133374 NA non-coding upstream 120902 32981182 ~ 32982028 (+)
LOC110487588 NA non-coding downstream 2525 33130317 ~ 33160062 (+)
G133439 NA non-coding downstream 8748 33144374 ~ 33173378 (+)
G133520 NA non-coding downstream 109371 33244997 ~ 33245280 (+)
G133523 NA non-coding downstream 117461 33253087 ~ 33253306 (+)
G133525 NA non-coding downstream 120866 33256492 ~ 33260732 (+)
G132342 LOC100136303 other upstream 1215358 31834170 ~ 31887572 (+)
eaf1 LOC106581241 other upstream 1736608 31360408 ~ 31366322 (+)
LOC110534710 LOC106605356 other upstream 1809896 31262054 ~ 31294577 (+)
G131517 ccne2 other upstream 2352976 30748055 ~ 30749954 (+)
G131491 NA other upstream 2402307 30700182 ~ 30700623 (+)
G133473 LOC106605294 other downstream 31812 33167438 ~ 33169378 (+)
G133663 LOC106605282 other downstream 360828 33496454 ~ 33497285 (+)
G133760 LOC106605274 other downstream 678407 33814033 ~ 33814483 (+)
G134735 LOC100136012 other downstream 826791 33962417 ~ 33962658 (+)
si:dkey-30e9.6 LOC106605205 other downstream 1552329 34687955 ~ 34692286 (+)

Expression


Co-expression Network