G133567 (LOC106605290)



Basic Information


Item Value
gene id G133567
gene name LOC106605290
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33327043 ~ 33329134 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU153824
AGGATCCTAACATGCTGATACAAAAAAATATGTACATCTGGCAAATCATTTTGTCATTcgtaccaaaacatttaaatatataaTAGTGTATAGATACAGGAAGTAGGGTCTCATGCAAAAGGAGACTTTCATTTTCTCTTTGAATAGCCAATGCCATTAGGGAATGTGATGGCCGTGTGTTTTTTCCATAGAAGACAAGAGCAAATGTACTGGCATCAAATCCAAAAACTCAAACAACCTGATATTCAGTAACTGATATCAGTGTGCTGTGATATTCAACAATGAATATTTACAGACCTTGAATAATTCAAAATGCTCTCGTACTGAGGCATAGGAATGACTGTAGGTAATACAGACCAATGTAAGTCACATACATTACCACCTTCAGCCTTTATAGTTCATAATAAACATGAAACATTTCAGTGAGAAATACATTGTATGCCAGCCAGAAACCTTTTCATCCTATGTCACAGAACACAAGTACTTCTCTGCATGTAAATGCTAGTTTTGTATAAACACACAGTACATCCCTGTAGTCTGAAGAGTGTTACAGTATATGGAAATCATGCCAGTGTATTTGCTGCTTAATATCCACATCATGCAAACAACAATCTGGCTGGACTGAGTGGCCCAGTCCCAATAGCTCACTGGGCTTTGAATGAAATGACGCATTTAGAAGTCCTTGACCTGAATGCTAGCTGCATACGAAACTAGCAGTCAGGACAAGTCGTGAAAAAAtacactatttaaaaaaaaAAATAAAAGGAAATTATAAATATGAACCATCAGAACTTATGGTTTGCACAATGACAccataagggggggggggggagtaataCTCATCTTGGTCACGACCACTTAAGAATGTATCGTTAAATATTCTGAAATTCATACGCAACTAAAGTTGGTCAATAATACTTCGAACTCTCAATAGAGATGCACAGACCATAGAAATAATAGCACTTTTACCTCAATCATGCACACTTACAGCAATATTAACTGACCATGGCCATAATCTGAAAAACAGGGTTATGATACGGAGTTCACTACTAGCATGCATGCAAGTATAAAGATATGGGAACAGTATCAAAATAGCTCCAGTGCCCTAAATTCCAGATCAAATTTACTGGACAAAATGCCTGGAGTTACAACTGCATGTTTTTTTGTGTCGCCAATGTCTGTCCCTAGTGTTTACTTGGTGAACAGCTCTCTGTATTTTCCCTCTCAAGGCTGAGTTGGTTTTGGAACTGGGGGTTATTGTCACTCAAAAGGAGCGAAGAGTCAGGACAACTGTCCTATTATAGCTGTCTGGTCAAGAATGAAGGTTGTCACTCAGCTGAAATCATGATTCTAAAAACAGCTGGTCTGATCAATACTATTTGTGCTTTGCACTGCTCAATGCATTATTACTGCAGTTTAgtctctcctccctgctcagtACATGACTCTCCTTGTCTTGTTATGGCCTCAAAGCCCTTCAAACAGGCCTTGACAGGAAAATCACATCAGGTTCCACCCAGAGATCAGGTGTCGGGGAAGGAAATAGAGTCTTGGAGGGTGTGTATAGGTTCTAGAGTGCTGAGCCAGGAGGAAGAGTTTGTACCATTTGTGCTAACAGCGGACACCCAGAGCTCAGGAACCCAGTGAAGGACCGTTGCTCTTGGGCAGCTTGGCATTATTATTGGGCGCGGGGTAGTAACGCTGGTCTGGACGGGCCTCTGAAGAGGATGGGTGGCCAAATAGGAATGTGTGCTTGCTGCTGTCTCTGGGGCCAGGTCTAGATAGAGGGGCAGAGGAAACTGGAGGAACCATGGGTTGGAGGTTCAAGATAGGGGGCGTGGTTCTGGAGACAACCGGCCCAGGGTGTCTGCAGGCTGGGAAGAGGAAGGTGCTATTGTTGGTGTTCTGGTTGAGGTTGGAGTCTGTCTGACGGGGCTCCTGTGTCTTGGCTGGGACTGTGTTAGTGGGGCTGGAGGCCAATGCCAGCTTGTCTCTAAGCTGCTGGACCTCCCAGGCTAGCTGTTCCACTGGGTGCTGGGTGGATGAGGAGATG

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU153824 True 2053 lncRNA 0.40 2 33327043 33329134

Neighbor


gene id symbol gene type direction distance location
LOC110487649 LOC106581815 coding upstream 5209 33316290 ~ 33321834 (+)
LOC110487588 NA coding upstream 166981 33130317 ~ 33160062 (+)
tmem176l.1 m4a8a coding upstream 277755 33045832 ~ 33049288 (+)
LOC110487536 NA coding upstream 281322 33028873 ~ 33045721 (+)
LOC110487688 LOC106605287 coding downstream 77675 33406809 ~ 33408519 (+)
ntrk1 LOC106605284 coding downstream 105564 33434698 ~ 33460997 (+)
LOC118939517 NA coding downstream 202456 33531590 ~ 33540695 (+)
LOC110487797 LOC106605278 coding downstream 339009 33668143 ~ 33694941 (+)
LOC110487856 LOC106581981 coding downstream 390699 33719833 ~ 33726238 (+)
G133566 NA non-coding upstream 694 33326029 ~ 33326349 (+)
G133565 NA non-coding upstream 1688 33325140 ~ 33325355 (+)
G133564 NA non-coding upstream 2124 33324679 ~ 33324919 (+)
G133563 NA non-coding upstream 3622 33323143 ~ 33323421 (+)
G133542 NA non-coding upstream 32917 33292540 ~ 33294126 (+)
G133552 NA non-coding downstream 30024 33359158 ~ 33359718 (+)
G133551 NA non-coding downstream 30844 33359978 ~ 33362906 (+)
G133648 LOC106605285 non-coding downstream 137596 33466730 ~ 33471416 (+)
G133655 NA non-coding downstream 153149 33482283 ~ 33482552 (+)
G133670 NA non-coding downstream 175010 33504144 ~ 33504466 (+)
G133473 LOC106605294 other upstream 157665 33167438 ~ 33169378 (+)
G132342 LOC100136303 other upstream 1439471 31834170 ~ 31887572 (+)
eaf1 LOC106581241 other upstream 1960721 31360408 ~ 31366322 (+)
LOC110534710 LOC106605356 other upstream 2034009 31262054 ~ 31294577 (+)
G131517 ccne2 other upstream 2577089 30748055 ~ 30749954 (+)
G133663 LOC106605282 other downstream 167320 33496454 ~ 33497285 (+)
G133760 LOC106605274 other downstream 484899 33814033 ~ 33814483 (+)
G134735 LOC100136012 other downstream 633283 33962417 ~ 33962658 (+)
si:dkey-30e9.6 LOC106605205 other downstream 1358821 34687955 ~ 34692286 (+)
G135916 NA other downstream 1642506 34971640 ~ 34971931 (+)

Expression



Co-expression Network