G133551


Basic Information

Item Value
gene id G133551
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33359978 ~ 33362906 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU153804
ATACAACCTCGCtgtcatttgttttgtttttttatacaaACATGTTTGCAGTCTATAAGTGAAATGTtcaagatgttgtctgtaagCCATccaattctttaaaaaaaattgagttGATGATGTAAGCTAATATTATTACATTGAGAggagaaagcacacacacacacacccatttcTTAATTATCCATCATTCCATTAAAGATGACCTCGTTCGTGCCTTATGAGctgcaattttttttttgcaaaaaggtTTCATACagcgtaagcacacacacacagaaatattgTTTTGGATATAGCATAATGGTATTGTGGGGAATGGTTAGTTCCAATTCAAGAAGAACATGCTATCTCAAGTCATGGAGCATCCCTTGAAGGATGACTATTTTGAGCCGCATGTTTGAACTACCTCTCAAAAGACAAACATTACTTAAAGTCCCTCATACCCTTGGCAAATTGTATTTTTGGAAATTAACTCAAATCTTAGTACCCTTAAAAATTGTTCTCTTTTGTATTTTTGGTTAAGTAGGGCATGGAAACTTCCAGGAACAGTGAACACAAATACAAGAGCGCCATCCATTGTGCAAGGCAGTGAATTGCATACAGATATTCTCACACCATTGTGCTTCAAGTGAAAAGACTGAACGGCTGTTTATCAAGTCAGGAAGATTGGTCTTCCTCATGAGTCTACATGGATCATTGGTAATAACACAGCTTGGGTGAGAAAGTGTTAATACATTGGTGATGAGAAAAACAATCAATTCCTAATCTGCAAATCATTGAGAGTAACATGAGACCAAAACGGTATCTAAAAAATGTGATATGTTCTAATCTCCagaattatttatatatatatttttttacatttgatctCTAAATCGCTTTATGAACTACGAACAATGACTCCATGTCTGGATGcaaaatgaaaaaaattaaaaacagggGCTTTACACCGAGTAGGGTACAAAAATTCCAGAAGAGAAACTGCAGCAAAAACAAATAGTGTACACCTGATGCACATtttgtaaaacatacaaacaagaCTGTAATGCCACAAGGACAAGAGACTGAAAAAGGCAACAAGGAAATAGAGTTAAACCACAACACTGGCACCAAAAAGCTGTACCCATGGTAACTGAATCCTTAGAGAAGGGGTTCTAGCCCATGCATCTGCCCTCCCGCAAGTAGAGGTGGCAGTGTCTACAGTTCTGACATGACCTAAGGACAACATAACAGTCAGATACCTTCAAAACGGTAACAAAATGTCTACAGACATTAGGAAAGTGCTTGAATTTGTGCAGAAAGAGGTTAAGCGACAGGGGTCAGTCACTTGTTTGGAATCAACACAATGCCCTCAATAGGACTTGAAGGGGAGTTGGGTTAAACAATCCAACTTGTTTTGAATCGTATCAATGGGGTGTCCATGTCAGGAATTTGGGGTTTTCCATAAGTAGGTTTTCACGAAAAGTTACATGAATATTTAGACCAAAGTAACACAGCCCTATGGACGAGATTCCAGAAAATACCTGTTACCTTTCTCAGCCACAAGAGAAGCAGAGACTAATTGACAGTTACAATGTAAGTGGACAATGTTACAATGGACAGTGTCTTTTTCAACCAAAATGTGAACGTTTACCAGTTTAGCATATACTGATTACCTTGAGGTCGAGCTGAAATTGCAAGGGGAGTTTGTGTTTTGAATGCTGGTTTAGTAGTGTTGGATGACCCTAAATGTACCAGCATATTATTGAAATGCCTCATTTTCATGGATATAAAATGACGAAAACAAGTCAGGAACAGTAAGATTCTAGCAATCTTATTAAATACTATTATAGTCATTCGGAATATCTACCACAGTACTCTGCCATGTTTGTTCTATAATTGATACTGGGAGACATCTAAAAATGGACACAATTTGGACACAATGGTGAATTTAGATTGGATGGTTCCTTGGCCATAAAAGGCATCTTAAGGGTGGATAGGGCTATCTGTTTGCCTGTTTATATTTGAGATGAACTTGTATAGAGGGGGTCTGTTGCATTCTGGAACGTTAGCAGCACCAATGCAGCCCACAGAACAGCAACCACTGTAACATAATACTGTAGTTTCAATTTGCATTACAAGAGAAAAGAAACCCAACTACTCATCAGGAAAGAGCTCCGTTCATTTCCAAGTCATACATGAGCACCCGGTATCAGTAATGCCCTAGGCTAGTCCGTCTGCATACATCTCTAACCCTCTGGTTGAAAAGACTAACAAGACATCGAAGGGCTGATTCGTATGTTAAAATACCATCAATTTACAGGGCCAAATATAGGTCGTCTCCACATATAGAGGGGTGATAATCAAGAAGTTTCAGGTTGTGCTTGTGCagtgttagtttgtgtgtgtgtgtgtgtgtaatgtggatGTAAGAGTGCGTGTATCGCCTGCCGTATACATTCTCTCCACCAGGAGGAGACAGTTGCGAGGTGACAAGGGGACAAAGCGGAGGAGAGCCTGAagttctcactcactcacacacacacacacagcctgcataAGAGCCACAGCAAATGTAAGAGAAGTGCACAGTCCTATTGTCTAACGCCCGCCGCAGCAGCCGCCAGCCACATTCTCTCCAGTCACTGTACCGATCCTGTCCAGGACGTTCTCCACACACAGTGTTGCCTTTAGAGAAGGAAGTGATGCGATGAGAGGGCCAGGCTCTGTATCGTCCTATAGCAGGAAACCTCATCCATCAGTTCCCTTGTGGTTGGTGGCCACAAAGCCAGTTCTGGTCAGTCTGTCCGTTCGTTCAGAACCTGTGGATGGCCGGCTCCGTTTCCCTCCTCTTCAGCTCCTCTCGGTAGCAGCAAGAGCAGTAGTTGCCCGTCTCAGGGTGTCCGTAGTAGTTGCAGCTAGGCGTCCGGCAGCGGCTGGACTGGAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153804 True 2929 lncRNA 0.33 1 33359978 33362906

Neighbor

gene id symbol gene type direction distance location
LOC110487649 LOC106581815 coding upstream 38144 33316290 ~ 33321834 (+)
LOC110487588 NA coding upstream 199916 33130317 ~ 33160062 (+)
tmem176l.1 m4a8a coding upstream 310690 33045832 ~ 33049288 (+)
LOC110487536 NA coding upstream 314257 33028873 ~ 33045721 (+)
LOC110487688 LOC106605287 coding downstream 43903 33406809 ~ 33408519 (+)
ntrk1 LOC106605284 coding downstream 71792 33434698 ~ 33460997 (+)
LOC118939517 NA coding downstream 168684 33531590 ~ 33540695 (+)
LOC110487797 LOC106605278 coding downstream 305237 33668143 ~ 33694941 (+)
LOC110487856 LOC106581981 coding downstream 356927 33719833 ~ 33726238 (+)
G133552 NA non-coding upstream 260 33359158 ~ 33359718 (+)
G133567 LOC106605290 non-coding upstream 30844 33327043 ~ 33329134 (+)
G133566 NA non-coding upstream 33629 33326029 ~ 33326349 (+)
G133565 NA non-coding upstream 34623 33325140 ~ 33325355 (+)
G133564 NA non-coding upstream 35059 33324679 ~ 33324919 (+)
G133648 LOC106605285 non-coding downstream 103824 33466730 ~ 33471416 (+)
G133655 NA non-coding downstream 119377 33482283 ~ 33482552 (+)
G133670 NA non-coding downstream 141238 33504144 ~ 33504466 (+)
G133676 NA non-coding downstream 146639 33509545 ~ 33509807 (+)
G133677 NA non-coding downstream 149406 33512312 ~ 33512793 (+)
G133473 LOC106605294 other upstream 190600 33167438 ~ 33169378 (+)
G132342 LOC100136303 other upstream 1472406 31834170 ~ 31887572 (+)
eaf1 LOC106581241 other upstream 1993656 31360408 ~ 31366322 (+)
LOC110534710 LOC106605356 other upstream 2066944 31262054 ~ 31294577 (+)
G131517 ccne2 other upstream 2610024 30748055 ~ 30749954 (+)
G133663 LOC106605282 other downstream 133548 33496454 ~ 33497285 (+)
G133760 LOC106605274 other downstream 451127 33814033 ~ 33814483 (+)
G134735 LOC100136012 other downstream 599511 33962417 ~ 33962658 (+)
si:dkey-30e9.6 LOC106605205 other downstream 1325049 34687955 ~ 34692286 (+)
G135916 NA other downstream 1608734 34971640 ~ 34971931 (+)

Expression


Co-expression Network