G134456


Basic Information

Item Value
gene id G134456
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33433704 ~ 33434590 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU154833
ctcagagagagagagggaattggggggagaaagagatggaatgGGACGAGGGAGATATGGTCTCCTGCCTCTGAGTGAGATGTCTCCTGTCCCACCAGTGGTTGCAGGTGTGAGACAACTAAGGAGTCAGGGTTCTTGGGTACCAACCAGTCTCATGCAGTGAAGATGGTTGCAAATGGCAGACACCCACAGAAAGTGATGCAGTGCAGAAGCATGGTGGATCCATGTTGCAACAGAGCTTCAGGCTGAAATGTTTCATTAGAGCACATGGCAAATGGACTTTGTGCTGTATGACTAAGTGATCAAATATGCTGGCCTGTGTCCCTACTTGTGtccctttttgtttgttttgtattttgtacgATGGTTTTAACTAACATGGATTTTAAGCTAAACGTAATAGAACAGGATGTTTATGTAAATGAAATATGGAGACGATGAAATCGAATTCAATTGAGAAACTTTGTTCTGAAACCTTGGTAAACACCATGCCTTAAAGT
>TU154834
ctcagagagagagagggaattggggggagaaagagatggaatgGGACGAGGGAGATATGGTCTCCTGCCTCTGAGTGAGATGTCTCCTGTCCCACCAGTGGTTGCAGGTGTGAGACAACTAAGGAGTCAGGGTTCTTGGGTACCAACCAGTCTCATGCAGTGAAGATGGTTGCAAATGGTGAATCCGTCTATCTGCATGGGTTTATGAATGAGGCAGACACCCACAGAAAGTGATGCAGTGCAGAAGCATGGTGGATCCATGTTGCAACAGAGCTTCAGGCTGAAATGTTTCATTAGAGCACATGGCAAATGGACTTTGTGCTGTATGACTAAGTGATCAAATATGCTGGCCTGTGTCCCTACTTGTGtccctttttgtttgttttgtattttgtacgATGGTTTTAACTAACATGGATTTTAAGCTAAACGTAATAGAACAGGATGTTTATGTAAATGAAATATGGAGACGATGAAATCGAATTCAATTGAGAAACTTTGTTCTGAAACCTTGGTAAACACCATGCCTTAAAGT
>TU154835
ctcagagagagagagggaattggggggagaaagagatggaatgGGACGAGGGAGATATGGTCTCCTGCCTCTGAGTGAGATGTCTCCTGTCCCACCAGTGGTTGCAGGTGTGAGACAACTAAGGAGTCAGGGTTCTTGGGTACCAACCAGTCTCATGCAGTGAAGATGGTTGCAAATGGTGAATCCGTCTATCTGCATGGGTTTATGAATGAGGTGACTTCCCTTGTAGGCAGACACCCACAGAAAGTGATGCAGTGCAGAAGCATGGTGGATCCATGTTGCAACAGAGCTTCAGGCTGAAATGTTTCATTAGAGCACATGGCAAATGGACTTTGTGCTGTATGACTAAGTGATCAAATATGCTGGCCTGTGTCCCTACTTGTGtccctttttgtttgttttgtattttgtacgATGGTTTTAACTAACATGGATTTTAAGCTAAACGTAATAGAACAGGATGTTTATGTAAATGAAATATGGAGACGATGAAATCGAATTCAATTGAGAAACTTTGTTCTGAAACCTTGGTAAACACCATGCCTTAAAGT
>TU154840
GGCAAGGCAGGCCATTAGTTGACTGTGTGGGAGAGCCACAGTCACCagacacctcagagagagagagggaattggggggagaaagagatggaatgGGACGAGGGAGATATGGTCTCCTGCCTCTGAGTGAGATGTCTCCTGTCCCACCAGTGGTTGCAGGTGTGAGACAACTAAGGAGTCAGGGTTCTTGGGTACCAACCAGTCTCATGCAGTGAAGATGGTTGCAAATGGCAGACACCCACAGAAAGTGATGCAGTGCAGAAGCATGGTGGATCCATGTTGCAACAGAGCTTCAGGCTGAAATGTTTCATTAGAGCACATGGCAAATGGACTTTGTGCTGTATGACTAAGTGATCAAATATGCTGGCCTGTGTCCCTACTTGTGtccctttttgtttgttttgtattttgtacgATGGTTTTAACTAACATGGATTTTAAGCTAAACGTAATAGAACAGGATGTTTATGTAAATGAAATATGGAGACGATGAAATCGAATTCAATTGAGAAACTTTGTTCTGAAACCTTGGTAAACACCATGCCTTAAAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU154833 False 500 lncRNA 0.43 2 33433704 33434538
TU154834 False 535 lncRNA 0.43 2 33433704 33434538
TU154835 False 551 lncRNA 0.44 2 33433704 33434538
TU154840 True 552 lncRNA 0.45 2 33433704 33434590

Neighbor

gene id symbol gene type direction distance location
LOC110487699 NA coding downstream 19753 33408916 ~ 33413968 (-)
rbm8a rbm8a coding downstream 29190 33400775 ~ 33404514 (-)
LOC110487659 LOC106605289 coding downstream 41894 33359159 ~ 33391810 (-)
LOC110534759 LOC106605290 coding downstream 76247 33327012 ~ 33357457 (-)
sv2a LOC106605292 coding downstream 119801 33256474 ~ 33313903 (-)
LOC110487724 LOC106605285 coding upstream 32133 33466723 ~ 33476821 (-)
smg5 LOC106605282 coding upstream 54818 33489408 ~ 33503810 (-)
syngap1b LOC106605281 coding upstream 88445 33523035 ~ 33590990 (-)
LOC110487763 LOC106605281 coding upstream 176266 33610856 ~ 33644021 (-)
LOC110487773 LOC106605251 coding upstream 213533 33648123 ~ 33662621 (-)
G134385 NA non-coding downstream 140017 33292844 ~ 33293687 (-)
G134379 NA non-coding downstream 146443 33286739 ~ 33287261 (-)
G134369 NA non-coding downstream 180282 33253213 ~ 33253422 (-)
G134483 NA non-coding upstream 53204 33487794 ~ 33488007 (-)
G134484 NA non-coding upstream 54037 33488627 ~ 33488924 (-)
G134490 NA non-coding upstream 70253 33504843 ~ 33505093 (-)
G134562 NA non-coding upstream 290931 33725521 ~ 33758779 (-)
LOC110487618 LOC100380645 other downstream 208602 33208500 ~ 33225125 (-)
G134102 NA other downstream 645583 32748208 ~ 32788121 (-)
LOC110514821 NA other downstream 682126 32738829 ~ 32756992 (-)
LOC110486999 prdm1 other downstream 1784909 31631886 ~ 31648795 (-)
G132197 NA other downstream 1890695 31536047 ~ 31543009 (-)
G134668 NA other upstream 430898 33865488 ~ 33865937 (-)
G135575 NA other upstream 1169625 34604215 ~ 34604478 (-)
G136399 psmc4 other upstream 1871777 35306367 ~ 35307729 (-)
drd2l LOC106582624 other upstream 2239708 35674291 ~ 35700846 (-)
G137479 NA other upstream 2935414 36370004 ~ 36370328 (-)

Expression


Co-expression Network