G133648 (LOC106605285)


Basic Information

Item Value
gene id G133648
gene name LOC106605285
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33466730 ~ 33471416 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU153907
TAAGTCATTTTTATTAGAGAAATTATTCCAGTGATGAATACACTCCAATAAGGCAGCATTGACACAATTTTAGTAACAAGATAGCAAACAATGACATTATTTTTCTCTTCAGTTTTTTACCCAGGAACTATATTATGTTCTCCACACAAAACACAGCGTATatgctaaataaaaataaacgtttAATTAAAGGTAGTATGAAAGGAAAATAGGCACAGACATTCATTCAAACCGCTTCTTCCCTCTTTCCTAAAACCTAGCACTCTTCAGGAGTCACTGGAAGTTCCTTGGTGTGTAGTTTGTTGTGTCATCCAACCAAATCTTTGCATAGCTTCCTATTTTACTTACTGTAACATGCCATTCAATATGAACACACTTTGGGAATCCTCATAGCTTCATGAAAGTGATCGAAGTAAACAAACAGATGCATTTGAACTAATTTTTCATCACTGTTTTTTTCCCAGCGATAATCTAGTTTGAACGAAAGTAGATTTCAATGACAAAAGCATAACAGAATGTTTAGAAATGTAGTTGAACATTCAAATATTCAACAACTTAAAGGACAATCGGTTATATGCGCCAACTGCAGGTATATCAGCACTACAATATGTCAATTCAGATACAGTTGTGGTCGATATGGTCGGCCACACGCTAGTCACAACCCACTTCCAAGACACAAGTTGTAAGACGATGAAAGCACCATACCAAAATCAATAGTGTAAAACTGAGTGGTATAATGATGATGAAAAGGGCAACTACATGGGTCTCTCTGTGTTCAATACACTAACCCTCAAAACAAAAATTGTGTTTCAAACAATAGGGCTCTCGTTGGAGTAAAAtgaagtgtgtctatgtgtgtatgtgtgtttgcctATACTGCCTGTACACTCTGCTCAACCTGCAACACAGTCCATTTCCCTCACTGACACAATATCACTTTCTATTCCCTCATAACCACCCAAGGCTTTAGGGGAGACTTGGGTTGGTTGTCACACGTTTTACTctggtgtgtatatataacaaGACTCTTTTCAACATTAACAGAAAGACCAAGGTCTTGGGTTGAAATAGGGATCCTACTAGTATGTTTTATTCCAACATGGAGTAATAAGCCATCAAACACACTCTGCCCACTTGTGACAACCAGCCCCATCGCAGGGTTGTCACTCTGTTTCAGCCATTAGTATGCGCCGTTCTCCTCTaggcagcctccactgatggggttggttgtcacaatgTTAGCTATTAGTTTATTCCTTTAGTAAAAGGAAATTAAGCAATATGGTTCACAGCGTCTTAGAAATAGCCTTTCTTTTATCAAATGATATTCCTAACAAAATGCATGGTAACATATGACATTTTGAGTCAatttgtgtgcgcgtgtgttgCACACACATGTGTACATTTGTCggtgtgtgacagagaaaatATGTTTGGGAGAGAAAGGCAACAAACCCAGATAGCAGAGAAACCTCTGGACAATGGATGAATGATGAATCGGGAAGATGCCGTTTTAGACATTGTTTGCTAATTGGCAAGACGTCTCACAGATGGTTTTAGAATATCTCCATTCTAAAttctacagttctacatagtATATATGTCGGCCAGGCATCAAGACTCTATTCTGATGTCTCGGCGACATCTTCCCAATGTGCTAACGCTTTCCACCGTACATATATTATTCCCAACACATTTTGATCTTCCGGGAAGGAAGGTTTACAGCAAAAGATCCCAATGCTAATTAAGATGCTACATGCTACCACATGGCTTGACCTAGGAACTCAGAAATAAGTATGGAATGTAGCTCTccctataatatatatatattttttttacatgtatacCCCCATAATGCAAacattcatttttggatgaaaaatgaaaaaaaaatactggatgaaaaaaaaagttttgcctataaattaaaattaaaatttaaaaaatacccTCACctaaatgttttgttatgatgacATGAATCGACCAGGTGGATTAGTTCTTTTGAAGAATTCACACATTTTAATCTTAAAAGTATTACACAGCACCCTCTAGTTTGGGAGTTATAAGCACTGTGACAATCAACCCTGGTCTCCCCTACACACTGAATACAGAGCTACATGATCAAATAATGACGTGTGTGTTAGGTCTAGTGTGGTACATGGTAAGGGCTATTATGTCAAGAAATGATCACATGATGTTGGGGATGTAATTAATAATTTTTCCTCATCTATAACATTTACAAAAATAATCATGCAAATATACAGGTAATgcccaaaataaaggaaacacttcagtaaatgagggatacaaagtatattgaaagcatgtgcttccacacaggtgtggttcctgagttaattaagcaattaatatcccatcatgcttagggtcatgtataaaaatgccctattgcccattattttggctaccatggctagaagagatctcagagactttgaaagaggggtcttaaAGGGTGTGTGTCTCTCCGTCACCACATttaaacccaattgaacactcaTGGGAGAATCTGGAGCGGCACCTGAGACAGCCTTTTCCACCCCTTCAActaaacaccaaattatggaatttctcgtggaagaatggtgtcgcatccctccaacagagttccagacacttggtGAACCTATGCCAAGGCATAGAAGCTGTTCTGGTTCGTgatggcccaacaccctattaagataCTTTATGTtgaggttttctttattttggcagttacctgtacatattCACTACGCTTTACAACTGAACAGAAACAGTAAgtgctgttatatatatatatatatactacaagGATGAAATACTCAAGAGATACCACACTCTTTTTCAAGGATACATGTAAACAATAGCCACTGACAACGTTATATCAGCATGGGGTGAGTGGTGTATTGGTTTGCCATAAACCTGCAATGACCACCACGATACCACATGAATACGACAGTGCCAAGACCCTTTGACCTCCACTGACCACATCCACATGCCTGGGAGATGAGGAGACAACACTCATTCAGTTCTGTTGTGCATCATCTAATATTTCTTCCATCAGATAGCTGTTATAAACAAGATCATTTGGTATGTCCTATCGATGTTACAATGATGGGTATGTTTTAGGGAGAATTTCAGTAATTCCCTGACATTTAAACAACACGTAGTGTTTCATTAATGTATGTTGTAGATGTAACAACTAAGAGTACTCCAAAGAACAATTAAAGTGACTGAGCATTCACAGGAACACAAACTGCAAAGAACCATGGAGTTTCCATGGAAACGTACCTCTGTAAAATGGCACCTGTCTTTTAATCATAGACATGGTACAGTGCTGTAGCTTTCAGGTACacgcttagaaaaaagggtttcaaaagggttctttggctgtccccatagggaaaacctttttggttccaggtagaacctttttggttaCAGATAGAAATGTTTTGGGTTCCATGTCGAAccttctgtggaaagggttctacaaggaactcaaaagggttctagatagcacttttttttctgagagtgtagACGTTTAGAGAAGGTTAATCTGAGAGAGCACTACACTGGTCTGTACATTTATTCAAGTCATAGTGGAGATTTAAATGAGATGGTATTGAATATTAAAACAAAATGGTGGAATCATAGTAAGTAGGCCAGTTAGTGATGAGAATCATGTAATGGATAGTCATACTTCATATTAAATATGGGCTTTGAGATGTTCTAATAATGGCTTACAAATATATAGGACAATTGAAAAACAGTAGCTAAATACTTATATATTAATATGAAAATTCCCTGCAAATTTAGAGTTAAAGATTTTTCCAGTTTGAGATGTACACAAACCAGAAATAATGTTACGACTACTTAGGTAACATTTGGGTAACTATATATAAAAGAAGGCACTTTTATGTGTTGTTAGACATCACATATGCTTCATACAACCCAGATCCTTTCAAGTATACGTGAAAAGAAGTCGGCATATGATACTTTAACTCGAAATACTTCCACAACTTTAAACAGTAAACAATGATACTGAATAACTGAAAGTCTTCATAAAAATAGCTGGGTATTCGGCTTCAAACAGTGAACACATTAATAAACTCCTAAACAAACCTTATAATGACGATAGAATAACATGTAGAAAAAACCATCCTGTGATAATAATCCAATGGGTTTATACAAATACTAACTGGTGTTAAAAGGTAGAATACAACTTCTTATCGTTATTATTTCCAAAGTTCACGACTGGGATAATGGTTTAGCCAACCCTTTACATTTGAACATACTAGTTGGTCACTGGTTGTGGGGAGTATCACTGTTGCTTGCGTTTCGCGGGTGGTGTCAGTGGGTGGTTGGCACTGTGGTGGGGGTTCCACAGCAGAGGGGCACTGAAGATGCCAATGATGCCTAGGTTGAGGATGATGCTGAGGGCCAGTGCCCCCAGGGTACTCAGGAAGGAGGGTACGGCCGCCTGCGCAATGAGCCACGCCCTGCGTGAGGTCATATCTGCTAGCACCGCCTCCATCTGGAAGTGGGTACCCACCACGGCACAGATGTGGAAAAGCTGGTGACTGT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153907 True 4596 lncRNA 0.38 3 33466730 33471416

Neighbor

gene id symbol gene type direction distance location
ntrk1 LOC106605284 coding upstream 5733 33434698 ~ 33460997 (+)
LOC110487688 LOC106605287 coding upstream 58211 33406809 ~ 33408519 (+)
LOC110487649 LOC106581815 coding upstream 144896 33316290 ~ 33321834 (+)
LOC110487588 NA coding upstream 306668 33130317 ~ 33160062 (+)
tmem176l.1 m4a8a coding upstream 417442 33045832 ~ 33049288 (+)
LOC118939517 NA coding downstream 60174 33531590 ~ 33540695 (+)
LOC110487797 LOC106605278 coding downstream 196727 33668143 ~ 33694941 (+)
LOC110487856 LOC106581981 coding downstream 248417 33719833 ~ 33726238 (+)
tap1 tap1 coding downstream 262028 33733444 ~ 33746441 (+)
LOC110487876 NA coding downstream 278231 33749647 ~ 33758792 (+)
G133551 NA non-coding upstream 103824 33359978 ~ 33362906 (+)
G133552 NA non-coding upstream 107012 33359158 ~ 33359718 (+)
G133567 LOC106605290 non-coding upstream 137596 33327043 ~ 33329134 (+)
G133566 NA non-coding upstream 140381 33326029 ~ 33326349 (+)
G133565 NA non-coding upstream 141375 33325140 ~ 33325355 (+)
G133655 NA non-coding downstream 10867 33482283 ~ 33482552 (+)
G133670 NA non-coding downstream 32728 33504144 ~ 33504466 (+)
G133676 NA non-coding downstream 38129 33509545 ~ 33509807 (+)
G133677 NA non-coding downstream 40896 33512312 ~ 33512793 (+)
G133678 NA non-coding downstream 41917 33513333 ~ 33513862 (+)
G133473 LOC106605294 other upstream 297352 33167438 ~ 33169378 (+)
G132342 LOC100136303 other upstream 1579158 31834170 ~ 31887572 (+)
eaf1 LOC106581241 other upstream 2100408 31360408 ~ 31366322 (+)
LOC110534710 LOC106605356 other upstream 2173696 31262054 ~ 31294577 (+)
G131517 ccne2 other upstream 2716776 30748055 ~ 30749954 (+)
G133663 LOC106605282 other downstream 25038 33496454 ~ 33497285 (+)
G133760 LOC106605274 other downstream 342617 33814033 ~ 33814483 (+)
G134735 LOC100136012 other downstream 491001 33962417 ~ 33962658 (+)
si:dkey-30e9.6 LOC106605205 other downstream 1216539 34687955 ~ 34692286 (+)
G135916 NA other downstream 1500224 34971640 ~ 34971931 (+)

Expression


Co-expression Network