G133677


Basic Information

Item Value
gene id G133677
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33512312 ~ 33512793 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU153937
aaaacctggctccctgcaggatctcgaaggctgaagacataagaggaagcggataacgattcttcactgttatgtcattcagccctcgataatctatgcaggggcgcagagacccgtccttcttcttgacaaaaaaaaaaccccgctccggcgggagaggaggaggggactatggtaccggcgtcaagagctacagacaaataatcttcgagagccttacgttcgggagccgacagagagtatagtctaccccgggggggagtggttcccggaaggagatcaatactacaatcatacgaccggtgtggaggaagagaggtggccctggaccgactgaacaccgtgcgcagatcgtgatattcctccggcacccctgtcaaatcaccaggctcctcctgtgaagaggagacagaggaaacaggagggatagcagacattaaacatttcacatgacaagagacgttccaggagaggatagaatc

Function

NR:

description
Retrotransposable element Tf2 protein type 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153937 True 482 lncRNA 0.52 1 33512312 33512793

Neighbor

gene id symbol gene type direction distance location
ntrk1 LOC106605284 coding upstream 51315 33434698 ~ 33460997 (+)
LOC110487688 LOC106605287 coding upstream 103793 33406809 ~ 33408519 (+)
LOC110487649 LOC106581815 coding upstream 190478 33316290 ~ 33321834 (+)
LOC110487588 NA coding upstream 352250 33130317 ~ 33160062 (+)
tmem176l.1 m4a8a coding upstream 463024 33045832 ~ 33049288 (+)
LOC118939517 NA coding downstream 18797 33531590 ~ 33540695 (+)
LOC110487797 LOC106605278 coding downstream 155350 33668143 ~ 33694941 (+)
LOC110487856 LOC106581981 coding downstream 207040 33719833 ~ 33726238 (+)
tap1 tap1 coding downstream 220651 33733444 ~ 33746441 (+)
LOC110487876 NA coding downstream 236854 33749647 ~ 33758792 (+)
G133676 NA non-coding upstream 2505 33509545 ~ 33509807 (+)
G133670 NA non-coding upstream 7846 33504144 ~ 33504466 (+)
G133655 NA non-coding upstream 29760 33482283 ~ 33482552 (+)
G133648 LOC106605285 non-coding upstream 40896 33466730 ~ 33471416 (+)
G133551 NA non-coding upstream 149406 33359978 ~ 33362906 (+)
G133678 NA non-coding downstream 540 33513333 ~ 33513862 (+)
G133699 NA non-coding downstream 47138 33559931 ~ 33560301 (+)
G133725 NA non-coding downstream 80830 33593623 ~ 33593990 (+)
G133761 LOC106605277 non-coding downstream 121366 33634159 ~ 33715078 (+)
G133781 NA non-coding downstream 164591 33677384 ~ 33680485 (+)
G133663 LOC106605282 other upstream 15027 33496454 ~ 33497285 (+)
G133473 LOC106605294 other upstream 342934 33167438 ~ 33169378 (+)
G132342 LOC100136303 other upstream 1624740 31834170 ~ 31887572 (+)
eaf1 LOC106581241 other upstream 2145990 31360408 ~ 31366322 (+)
LOC110534710 LOC106605356 other upstream 2219278 31262054 ~ 31294577 (+)
G133760 LOC106605274 other downstream 301240 33814033 ~ 33814483 (+)
G134735 LOC100136012 other downstream 449624 33962417 ~ 33962658 (+)
si:dkey-30e9.6 LOC106605205 other downstream 1175162 34687955 ~ 34692286 (+)
G135916 NA other downstream 1458847 34971640 ~ 34971931 (+)
G135920 LOC106605214 other downstream 1459656 34972449 ~ 34972801 (+)

Expression


Co-expression Network