G133761 (LOC106605277)


Basic Information

Item Value
gene id G133761
gene name LOC106605277
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33634159 ~ 33715078 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU154039
atggtagagaaattaacattaaATGCTCTGGGCTCAGCGTATCTTTGGGCAACTGGTCAGAGGGAAGATGTATATTTGTGCCAACTTGTAATCCTTGTGATGGTTTGTCCGTCTTCAAATCatgttctgttgttttgtatttttctgtTATATCCACCATCACCATCCCCTCTTTCTTGCATTCCATTTTCTGTCTATCCATTACCAATTCATCCATCCCTTTAATGTGCTCAACCCcctcctctgtcccagtctctccTTTTGCTTGATTTATTTGGTTATCCTTTTTTCTTTTGTCTCCATCTCCACTTTCAGTGTTGGCTTTTCCAATCTGTCCATGTCTGGCAGTGGCATCCTCTTCCTCACTGGAGTCTTCATCGTTGCTCTTGCCTGTTATTGGCTCTGTCCCTCCCTCAACAACTCTCTCAACATCCCCCTCCTTAATAATGATTAGATCCTCCAAATGCTCCTCTTCAACTGTTTCAACTTTGACCCCTGGGTATTCCATGACAACCTCCATTCACGTCTG

Function

NR:

description
uncharacterized protein LOC110487821

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU154039 True 529 lncRNA 0.43 2 33634159 33715078

Neighbor

gene id symbol gene type direction distance location
LOC118939517 NA coding upstream 93464 33531590 ~ 33540695 (+)
ntrk1 LOC106605284 coding upstream 173162 33434698 ~ 33460997 (+)
LOC110487688 LOC106605287 coding upstream 225640 33406809 ~ 33408519 (+)
LOC110487649 LOC106581815 coding upstream 312325 33316290 ~ 33321834 (+)
LOC110487588 NA coding upstream 474097 33130317 ~ 33160062 (+)
LOC110487856 LOC106581981 coding downstream 4755 33719833 ~ 33726238 (+)
tap1 tap1 coding downstream 18366 33733444 ~ 33746441 (+)
LOC110487876 NA coding downstream 34569 33749647 ~ 33758792 (+)
LOC110487915 LOC106582023 coding downstream 158827 33873905 ~ 33880108 (+)
LOC110487926 LOC106605271 coding downstream 172761 33887839 ~ 33945400 (+)
G133725 NA non-coding upstream 40169 33593623 ~ 33593990 (+)
G133699 NA non-coding upstream 73858 33559931 ~ 33560301 (+)
G133678 NA non-coding upstream 120297 33513333 ~ 33513862 (+)
G133677 NA non-coding upstream 121366 33512312 ~ 33512793 (+)
G133676 NA non-coding upstream 124352 33509545 ~ 33509807 (+)
G133785 NA non-coding downstream 25516 33740594 ~ 33742572 (+)
G133759 LOC106605274 non-coding downstream 64158 33779236 ~ 33783239 (+)
G133844 NA non-coding downstream 83782 33798860 ~ 33799090 (+)
G133847 NA non-coding downstream 86876 33801954 ~ 33802157 (+)
G133852 NA non-coding downstream 92256 33807334 ~ 33807657 (+)
G133663 LOC106605282 other upstream 136874 33496454 ~ 33497285 (+)
G133473 LOC106605294 other upstream 464781 33167438 ~ 33169378 (+)
G132342 LOC100136303 other upstream 1746587 31834170 ~ 31887572 (+)
eaf1 LOC106581241 other upstream 2267837 31360408 ~ 31366322 (+)
LOC110534710 LOC106605356 other upstream 2341125 31262054 ~ 31294577 (+)
G133760 LOC106605274 other downstream 98955 33814033 ~ 33814483 (+)
G134735 LOC100136012 other downstream 247339 33962417 ~ 33962658 (+)
si:dkey-30e9.6 LOC106605205 other downstream 972877 34687955 ~ 34692286 (+)
G135916 NA other downstream 1256562 34971640 ~ 34971931 (+)
G135920 LOC106605214 other downstream 1257371 34972449 ~ 34972801 (+)

Expression


Co-expression Network