G133759 (LOC106605274)


Basic Information

Item Value
gene id G133759
gene name LOC106605274
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33779236 ~ 33783239 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU154037
CATGAACAGTAGGGATGTAGACATTTCCATGAAAAGCGAATACAAAGAATACCTTCGTTTTTACAAAGACTGCAGTGCATGACGGTAGCCGATGACCAAAGACACTCAACATTCAAAATGGCAGCGCAGGTGATGAAAACAGTAACATCGGAGATGAAACCTAACAATACAATTCCAGAGGCCACGAGCAAGCTAAAGTGACGACATAAAGAGATTGCCCTCCTACTGTATCATGTTTCTGTCATTTCTAATCTGTCCATTTCACATCATAACACACAGGAAATGAACCCTGGAACACACATTTTGCACAGCATTATCAAGAACAATTGCACTGCCACTGACTGCTGAGCTTTAGACAATTATGGTTACATAAAGACAGGAAATAGTAGATTACCTTTTTTCCATGAGTGGGTTGGAGGCGCTTGTTATAGACAAGGCTGAGGTTAGTTAGTCACAGGATGAGGGATCGTCAAAGCTGAGCAAATGTACAATCACAAATCATCTCTTATCACGAGAGATGAGGGCATGGAGTTCACGACCCCCCAGGTAATACAAACGGATACAGGACCTGGTGTCATTTGACCCAACTCTGTGGAGGTTACATTTGTCCATGTTAATGGTGTCCTACCGGAATGCTGTAGGTGTTAAAATACAATGATGTAAAGGATGAGATCACCTGATAGTTCCTGGCTGTATTTTTCCACACTTTCCTACCATAACTTGATGTACATTGTACTTGAACAGGCAGTATTGTCTTCTTGTAAAATAATATACAAAGGAACAAGGATcacatatataaaaaaaaaaggacTCAAATTGGTATGAACAACAGAACTGATGAACACATAATAAACAATGTATGAATAAGCAAATATGACAGTCCTACGTGATCTTATTTCCGGGCAAAAAGCGATTTGTTTAAATCTAAAGAGAAAAAATGACTTGATAAGAAGCCAATGGGGAAATCTGTCTCAGGTCCAGATAATCTCTACAGTTATCACAGAGGGGTGTTTTAGATTTACATTTCTTACTCATATTCGTCCTAGCCACACAAATATTAAAACTGACAAGTCATTTAATATTCTCTCCCTAGCTGCGACCCACAAAGCtaaataaaatatgttgaatacAACAAGTGCTTATTAAAGCTCGTAATCGCCTAAGGCGAAGTGTCGCTGGAGAAAAACAATACCACAGATAAtatcacaaaataaaaaaaagatccTGACTTCATATCAAATCTGCTATTTGACATGTGGGCAAACTCCTTTCTACTTGAACAAGTAGAAGCTGTGGAAAATCCATCAAATATGGTTCAAACATGACCTCTGACCACTTGGCCATTAGTAATGACCTCACGCCTACAGCATGGACCATATGGTGGAAAAAGTTGGCAATGATGACTCCATAGCTACAAATCCCCAATATGCCTAAGGAGGTAGCTAGCTCCAGTATGAGCGTTAGAAAGCACACTTCAGCTAGCGTTAGCACGACAGAATACACCGAGCCTAACttcaaatcaaaaacagaaactTACCCTTTAAATCAACAACACCTGTTAAAGCCAAATTCCTTACCTCCCGTTCAAATCTAAAACAGAGAACACTGAACTTACCCTCATATTACCTTCAAACACTGATTGTAGCAACCCTCTCAGGCTATAACACTGAAACCACCTTGAAACTTCTGACATTTGTACTTCACGATTTAGGCCCAGTACCACAATAAGGCTATCCTGGTCACAGTTTGGAATTCTATTCTATACAATACATCTGCCATTGAGATGAACATTTCAGAACAGTCGGTTATTCAGAAAAATACCACATCTACAAAACGTCGACAAGCCTATATTCATCTGTAAACATACAGGTTTCTACAGACTTTGCTTAGCAACTGCAGCACAAGAAAAATCAATCCCTATGAAAATCACAATCCAAATGAAGTGCTATTCGTTATTTTTCCGAGGTGAGGTTTTCCACTGTCCATAGCCACATAAGTGACCCCCATTATAAATGTATGACTTGACTGACACCCCACTGACAACGTCCATTAGCCGGTTAATGATTTCTCCACACAGCATCGATGCAGCACCACTTTAAAATGGAAAGCAACATGATACCTTGAAAGACTACGTTATGATTTTGGTATGGTCAGAAATGACACCGTCAAGAGGGGCTTTTAAAAGCTTGAGGTGAAATACTAAAGCAAAGTCAATGGAAAATGGCAATTCGAACACAGCTATTCCAAATTGctcaatcattttttttttttttacttcttctGCGCTCCGTTTCTATCTTGAACACCCAGTCGTGGCACAGCCCATAACCTTGCCCTCATACTTGCCAAGTACTTTTTAATGACCATTGATTGGAAAAGCTATTAAAATCAAACGTGAGTAAACTCTCAAAGTTGACTCAATATTTCCATGTTTGGTTCTCATCACACTTCACttccactcacccacacacattcaATGCAGATTGACTCCATTATCAAACCCTTGACTTGGCTTGGATATTGACACATTCGGAATGCAAGGCGAATGCATCATACCTAGTATAAGAATCAAAGCGATTATCAGCATCATCTGTAGTACTTTACATTATGTGCTAAAAGTAAATCAAGTTCCATTCACCTTGCATTGGATTGCCTGTCGCAACAACAGCCACTACATTTCCCACAGTGCTCCTCATCTAAACCCATGTGACATACAGTAACTGTACCACTATGGTCCCGTACAAATAAGGACAAGCGAGTTTGCCTGGTTAAAGTCTGTGTTTCTTCAGACCCAAGCCCCACTGGTTCCATCAATTTGTCCATTATATCCAGTGACTCTCGTACATTAGTATCCTGCGCATCATTCTCAGTTATGTACGTTCTCTATGTATAGGCATAGGATCAGTCTGAGGCTGTGAGAGAGACTGGTGTGTGTCCATTGTGGAGAGATGCTGCAGAGGATAGAGTGATTGCATGGTAGGAGGATGTTGCAGAAATTTAGGCTGTTCCAGGGGGTAATGGTGACTTTGTGGAGCCCCTATCTCAGGTTATGATGTTTTGTAGGTAAATGATTGATGGGTAGGAAACCCCTTAGGTGTGATGTCTGCTGTGGTCTGAAGAGGTTTACACATCTGACCTTTGACTTTCTTCGGGGCATTGATTGGTCAATTTGATCTGTCCATCATCCTTTACTGCCTTTTGCACCTCCTGCACTAAATGTTCATCCTGGTCAGCTGGGTCTTGTTGCAAGTCAACATTCTCAGTTTCTCCATTGTCTTCCCCTCCATTTGTCTCTTCCTTAGTCTCAACCCCATTTTCCTTCACTTCCATTTcagctcctccccctttctcctctttctGCCCTTGCTCTTtggtctccacctccacctctgacCCCTTGGTAGTTTCGGTTTCATCATCAACTGCCACCCCATTTTCTTTCTCTTCCacgatctccctctctccatctctttcctcctCAGTCTCTGCCCCTGCTTCTTCTCCCTCCTGCACTCTCCCCTCTTTGTCGCTCTTGTCATCTGTTCCTGCAGCTCCAACTCTCTCCTCCCCAGTTTCTACCCCGCTTTCTACCCCTTCCTCAGTTTCTGCCTCAACTTttttctcttcctccacctcacAGGGAGCCTCACCCTCTTTACACACAGTCTCTACCTTCACCTCTTTCACTTTCTCCTTTTTGTTCCCCCTGTTTCCCTTCACGTTCCTCTCCTCTTTGAGCACCTTTTCCCCATCATCAAGAATCTTGGAATCTTCCAGATCTTTCTCTGCTGCCGATTgcttgtttttcttcttcttcttgttttttGACGTGTCTTTAACAGAGTTCTTGTTGGACTTGCTTTTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU154037 True 3865 lncRNA 0.58 2 33779236 33783239

Neighbor

gene id symbol gene type direction distance location
LOC110487876 NA coding upstream 20444 33749647 ~ 33758792 (+)
tap1 tap1 coding upstream 32795 33733444 ~ 33746441 (+)
LOC110487856 LOC106581981 coding upstream 52998 33719833 ~ 33726238 (+)
LOC110487797 LOC106605278 coding upstream 84295 33668143 ~ 33694941 (+)
LOC118939517 NA coding upstream 238541 33531590 ~ 33540695 (+)
LOC110487915 LOC106582023 coding downstream 90666 33873905 ~ 33880108 (+)
LOC110487926 LOC106605271 coding downstream 104600 33887839 ~ 33945400 (+)
LOC118939520 NA coding downstream 381447 34164350 ~ 34169250 (+)
LOC110488005 rab5a coding downstream 393804 34177043 ~ 34185964 (+)
ube2e2 LOC106582102 coding downstream 503211 34279641 ~ 34317474 (+)
G133785 NA non-coding upstream 36664 33740594 ~ 33742572 (+)
G133761 LOC106605277 non-coding upstream 64158 33634159 ~ 33715078 (+)
G133781 NA non-coding upstream 98751 33677384 ~ 33680485 (+)
G133725 NA non-coding upstream 185246 33593623 ~ 33593990 (+)
G133699 NA non-coding upstream 218935 33559931 ~ 33560301 (+)
G133844 NA non-coding downstream 15621 33798860 ~ 33799090 (+)
G133847 NA non-coding downstream 18715 33801954 ~ 33802157 (+)
G133852 NA non-coding downstream 24095 33807334 ~ 33807657 (+)
G133854 NA non-coding downstream 26365 33809604 ~ 33809899 (+)
G133855 NA non-coding downstream 29400 33812639 ~ 33812922 (+)
G133663 LOC106605282 other upstream 281951 33496454 ~ 33497285 (+)
G133473 LOC106605294 other upstream 609858 33167438 ~ 33169378 (+)
G132342 LOC100136303 other upstream 1891664 31834170 ~ 31887572 (+)
eaf1 LOC106581241 other upstream 2412914 31360408 ~ 31366322 (+)
LOC110534710 LOC106605356 other upstream 2486202 31262054 ~ 31294577 (+)
G133760 LOC106605274 other downstream 30794 33814033 ~ 33814483 (+)
G134735 LOC100136012 other downstream 179178 33962417 ~ 33962658 (+)
si:dkey-30e9.6 LOC106605205 other downstream 904716 34687955 ~ 34692286 (+)
G135916 NA other downstream 1188401 34971640 ~ 34971931 (+)
G135920 LOC106605214 other downstream 1189210 34972449 ~ 34972801 (+)

Expression


Co-expression Network