G133886


Basic Information

Item Value
gene id G133886
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33849990 ~ 33850809 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU154173
CTGATGCATTCATGCTCATTAATCTGCCTCTGAACGGTTGTTATGCTATAAACAACTAGAACACTAAGTTGTCTGTGACTTCTGTCCAAAGAGATGTACAGTCTGTCTTTATCAGTGTCTTTTCCTGTAGGCTACATGTTTCTTTTCTCAAGCCTTGAGAAATAAGGATGTAGACTAGTGGTAAACACATGCAAGTTAAAGTAGAAAAAAAAGGGAGTTACCTGATCAGAAGCTGTTGACTACAGGAGTTGGAAAGTTTACTGTTGAGATCAAGAGAACGCCACTGGAACGGCTCcccgaacaaacacacacattctactGACAGGAGAACAGCACCGCGCAACAGTCCACGCTCAGATCCTCTGCGATTCTTCACTCAGGTCCTGCAGATACAGCTCGAACAGAGGCTTTTGGGTCAAAGAGGGGAAAAAGACAGCAAGAAGACTAAAATCTGGATGGGATCAGTAGCTCTGCCAGCTTGTTCGATCCTCGCCAGAGGCTCACTAGCTAACGGTGCGCAGCAAACACTTTGAGCGCGTGCGTTTAGGTCATGCTCAAAGTATGCCTCGGCTATGTTCTGCAAGCTCAGGGAAACCACATCCTGTCACatatctacctcctctctctctctctctctctctctcttcctctcttgtgATTGTCTGAAGCGATGGAGCGCTCTGACCCAACCTCTGTTCGGCGcagcccctccacccctctatctttc
>TU154175
CTGATGCATTCATGCTCATTAATCTGCCTCTGAACGGTTGTTATGCTATAAACAACTAGAACACTAAGTTGTCTGTGACTTCTGTCCAAAGAGATGTACAGTCTGTCTTTATCAGTGTCTTTTCCTGTAGGCTACATGTTTCTTTTCTCAAGCCTTGAGAAATAAGGATGTAGACTAGTGGTAAACACATGCAAGTTAAAGTAGAAAAAAAAGGGAGTTACCTGATCAGAAGCTGTTGACTACAGGAGTTGGAAAGTTTACTGTTGAGATCAAGAGAACGCCACTGGAACGGCTCcccgaacaaacacacacattctactGACAGGAGAACAGCACCGCGCAACAGTCCACGCTCAGATCCTCTGCGATTCTTCACTCAGGTCCTGCAGATACAGCTCGAACAGAGGCTTTTGGGTCAAAGAGGGGAAAAAGACAGCAAGAAGACTAAAATCTGGATGGGATCAGTAGCTCTGCCAGCTTGTTCGATCCTCGCCAGAGGCTCACTAGCTAACGGTGCGCAGCAAACACTTTGAGCGCGTGCGTTTAGGTCATGCTCAAAGTATGCCTCGGCTATGTTCTGCAAGCTCAGGGAAACCACATCCTGTCACatatctacctcctctctctctctctctctctctctcttcctctcttgtgATTGTCTGAAGCGATGGAGCGCTCTGACCCAACCTCTGTTCGGCGcagcccctccacccctctatctttccctctccctctctttcactcactcaagGCTTCTCCGGGAGCCGCACCAGT
>TU154171
TCAGAAGCTGTTGACTACAGGAGTTGGAAAGTTTACTGTTGAGATCAAGAGAACGCCACTGGAACGGCTCcccgaacaaacacacacattctactGACAGGAGAACAGCACCGCGCAACAGTCCACGCTCAGATCCTCTGCGATTCTTCACTCAGGTCCTGCAGATACAGCTCGAACAGAGGCTTTTGGGTCAAAGAGGGGAAAAAGACAGCAAGAAGACTAAAATCTGGATGGGATCAGTAGCTCTGCCAGCTTGTTCGATCCTCGCCAGAGGCTCACTAGCTAACGGTGCGCAGCAAACACTTTGAGCGCGTGCGTTTAGGTCATGCTCAAAGTATGCCTCGGCTATGTTCTGCAAGCTCAGGGAAACCACATCCTGTCACatatctacctcctctctctctctctctctctctctcttcctctcttgtgATTGTCTGAAGCGATGGAGCGCTCTGACCCAACCTCTGTTCGGCGcagcccctccacccctctatctttc
>TU154172
TCAGAAGCTGTTGACTACAGGAGTTGGAAAGTTTACTGTTGAGATCAAGAGAACGCCACTGGAACGGCTCcccgaacaaacacacacattctactGACAGGAGAACAGCACCGCGCAACAGTCCACGCTCAGATCCTCTGCGATTCTTCACTCAGGTCCTGCAGATACAGCTCGAACAGAGGCTTTTGGGTCAAAGAGGGGAAAAAGACAGCAAGAAGACTAAAATCTGGATGGGATCAGTAGCTCTGCCAGCTTGTTCGATCCTCGCCAGAGGCTCACTAGCTAACGGTGCGCAGCAAACACTTTGAGCGCGTGCGTTTAGGTCATGCTCAAAGTATGCCTCGGCTATGTTCTGCAAGCTCAGGGAAACCACATCCTGTCACatatctacctcctctctctctctctctctctctctcttcctctcttgtgATTGTCTGAAGCGATGGAGCGCTCTGACCCAACCTCTGTTCGGCGcagcccctccacccctctatctttccctctccctctctttcactcactcaagGCTTCTCCGGGAGCCGCACCAGT
>TU154174
TCAGAAGCTGTTGACTACAGGAGTTGGAAAGTTTACTGTTGAGATCAAGAGAACGCCACTGGAACGGCTCcccgaacaaacacacacattctactGACAGGAGAACAGCACCGCGCAACAGTCCACGCTCAGATCCTCTGCGATTCTTCACTCAGGTCCTGCAGATACAGCTCGAACAGAGGCTTTTGGGTCAAAGAGGGGAAAAAGACAGCAAGAAGACTAAAATCTGGATGGGATCAGTAGCTCTGCCAGCTTGTTCGATCCTCGCCAGAGGCTCACTAGCTAACGGTGCGCAGCAAACACTTTGAGCGCGTGCGTTTAGGTCATGCTCAAAGTATGCCTCGGCTATGTTCTGCAAGCTCAGGGAAACCACATCCTGTCACatatctacctcctctctctctctctctctctctctcttcctctcttgtgATTGTCTGAAGCGATGGAGCGCTCTGACCCAACCTCTGTTCGGCGcagcccctccacccctctatctttccctctccctctctttcactcactcaagGCTTCTCCGGGAGCCGCACCAGTTCCAGTCGACTGACTGAAGAATCCATCTGAGGATgaggctggg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU154173 False 727 lncRNA 0.39 1 33849990 33850716
TU154175 False 777 lncRNA 0.48 1 33849990 33850766
TU154171 False 502 lncRNA 0.52 1 33850215 33850716
TU154172 False 552 lncRNA 0.46 1 33850215 33850766
TU154174 True 595 lncRNA 0.48 1 33850215 33850809

Neighbor

gene id symbol gene type direction distance location
LOC110487876 NA coding upstream 91198 33749647 ~ 33758792 (+)
tap1 tap1 coding upstream 103549 33733444 ~ 33746441 (+)
LOC110487856 LOC106581981 coding upstream 123752 33719833 ~ 33726238 (+)
LOC110487797 LOC106605278 coding upstream 155049 33668143 ~ 33694941 (+)
LOC118939517 NA coding upstream 309295 33531590 ~ 33540695 (+)
LOC110487915 LOC106582023 coding downstream 23096 33873905 ~ 33880108 (+)
LOC110487926 LOC106605271 coding downstream 37030 33887839 ~ 33945400 (+)
LOC118939520 NA coding downstream 313877 34164350 ~ 34169250 (+)
LOC110488005 rab5a coding downstream 326234 34177043 ~ 34185964 (+)
ube2e2 LOC106582102 coding downstream 435641 34279641 ~ 34317474 (+)
G133884 NA non-coding upstream 1438 33848338 ~ 33848552 (+)
G133878 NA non-coding upstream 8883 33840883 ~ 33841107 (+)
G133876 NA non-coding upstream 9829 33839913 ~ 33840161 (+)
G133857 NA non-coding upstream 33516 33816169 ~ 33816474 (+)
G133856 NA non-coding upstream 35145 33814628 ~ 33814845 (+)
G133895 NA non-coding downstream 16682 33867491 ~ 33867993 (+)
G133896 NA non-coding downstream 17636 33868445 ~ 33871942 (+)
G134764 NA non-coding downstream 133413 33984222 ~ 33984490 (+)
G134832 NA non-coding downstream 177642 34028451 ~ 34028684 (+)
G134835 NA non-coding downstream 179384 34030193 ~ 34030403 (+)
G133760 LOC106605274 other upstream 35507 33814033 ~ 33814483 (+)
G133663 LOC106605282 other upstream 352705 33496454 ~ 33497285 (+)
G133473 LOC106605294 other upstream 680612 33167438 ~ 33169378 (+)
G132342 LOC100136303 other upstream 1962418 31834170 ~ 31887572 (+)
eaf1 LOC106581241 other upstream 2483668 31360408 ~ 31366322 (+)
G134735 LOC100136012 other downstream 111608 33962417 ~ 33962658 (+)
si:dkey-30e9.6 LOC106605205 other downstream 837146 34687955 ~ 34692286 (+)
G135916 NA other downstream 1120831 34971640 ~ 34971931 (+)
G135920 LOC106605214 other downstream 1121640 34972449 ~ 34972801 (+)
LOC110488281 apom other downstream 1134163 34984948 ~ 35000555 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000293_00000768_00015308 NA coding CI01000293 null 549 ~ 15818 (-)
rainbow trout (Oncorhynchus mykiss) G237479 NA non-coding NC_048567.1 CM023221.2 23893301 ~ 23893534 (-)
eurasian perch (Perca fluviatilis) G200244 NA non-coding NC_053131.1 CM020928.1 5294383 ~ 5294753 (+)
tiger barb (Puntius tetrazona) G182968 NA non-coding NW_025048098.1 JAEQBD010000443.1 717032 ~ 726664 (+)