G135409 (LOC106605262)


Basic Information

Item Value
gene id G135409
gene name LOC106605262
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 34384555 ~ 34393407 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU155927
TGTAATACCTGCATTTGGAATGATGGACCTATATTGGAAAAAAATTACCCCCAAGAACACTACAACAATAATCATCCATTTATACACAGCCTAAATATCACGTCAATAtgataaaacatttcaaatgtccaGTAGATTATCTGTCAGGTTAAATATGCCtttaagcaaaaaaaaaaagttaggcTGTGCATGTTAAATAGAGAACCACTGGTAGCTGTTGGACTCACTTTGTCGACTGTTGACCCTTGACCCGGTTGTTGTCCTGTCCGTTGTAGGTGACGGCTGCCAGCTTCCTGCTACGGTAGTTCTCATAGTGGACGTTATTGGTCACGTCCTTCAGGTCCTGCATGTGGGTTCTGATGAGCATGTCTCGTAGGATGGTGAAATCACAGTGGTCTCCGTTCTCAACTTCTGCCACTCCCCATGGGTACTGTCGTCCTCTGGTCCTCTTCCCGTTCACCTCGATGATGGTGTTACTGCCCACCACGGCCAGGGGCAGACGGTCCTTGATCTTCTTCACCAGTTTGTTCTCTTCCTCATCATCTGTCTCTGGGAACTCGTAGATCTTGATTTTGTGTTCCAGGATTTCCCGCATGATCTGCTTCTTGAACCGTTGGCACTCCTCTGGGGTGAGAGTGTCTGCTTTTGCGATCAGTGGGATGACGTTCACCTTCTCATGCAACCGTTTCATAAACTCAATATCCAGAGGCTTCAGTCCGTGTCCCGAGGGGGCGATGAAGTAGAGGCAGCACTGCACTCTGCTGTCAGGCATCAGTCGTCTGTTCACCCGCGACTCACAGTTGAGGTAATCCTCAAACTTGCTGTCTATGTGGTCGATGACCGGCTGCCAGCAGTTGCTATTGTCCACAGCGTCGCCGAATCCTGGGGTGTCGACTATTGTGAGCAGGAGCTGGACACCACCTTCCTTTACTAACACTTTGGATTGCTCCACTGTACAGTCTTTTTGACTCTGTGTGAAGGCCCAGGGTATTCTGAAGAGTACAAGTCTGTTAGGAACAGAGAGTTGATCAACGTGGACTTGCCCAATCCTGATTCACCAACAACCATCAGGGTGAATTCAAAGCCTCTCTTCACCGACTTTCTGTACACTTGGTTGGGAAGGCTAGCAAAGCCCACATACCCCTCCAGATTCTTTTGCTCACCCATAATGTTGACGTTTTGCTGCCGCTCAGAAACCGATCATTCACAACCCGACATTCCCCTTCTCACTAGCGCATACCTACGTACTGTGGCCGACGTAATGTCAC

Function

NR:

description
septin-7 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU155927 True 1268 lncRNA 0.35 10 34384555 34393407

Neighbor

gene id symbol gene type direction distance location
nek10 nek10 coding downstream 529 34370816 ~ 34384026 (-)
LOC110488012 LOC106605268 coding downstream 149706 34193659 ~ 34234849 (-)
LOC110534780 pp2d1 coding downstream 196544 34186054 ~ 34188011 (-)
LOC110534769 efhb coding downstream 212837 34170745 ~ 34171718 (-)
LOC110487942 LOC106582030 coding downstream 250321 34074555 ~ 34134234 (-)
LOC110488086 LOC105021885 coding upstream 12660 34406067 ~ 34422793 (-)
LOC110488127 ica69 coding upstream 71659 34465066 ~ 34475371 (-)
LOC110488138 LOC106605258 coding upstream 90658 34484065 ~ 34493285 (-)
LOC110534798 LOC106582184 coding upstream 100115 34493522 ~ 34600391 (-)
LOC110534811 LOC106582196 coding upstream 253548 34646955 ~ 34677655 (-)
G135265 NA non-coding downstream 16480 34367497 ~ 34368075 (-)
G135262 NA non-coding downstream 17380 34366884 ~ 34367175 (-)
G135255 NA non-coding downstream 22963 34361266 ~ 34361592 (-)
G135210 NA non-coding downstream 67089 34316731 ~ 34317466 (-)
G135170 NA non-coding downstream 167501 34216817 ~ 34217054 (-)
G135438 NA non-coding upstream 49672 34443079 ~ 34473477 (-)
G135441 NA non-coding upstream 57220 34450627 ~ 34453091 (-)
G135406 NA non-coding upstream 70915 34464322 ~ 34464588 (-)
G135522 NA non-coding upstream 207476 34600883 ~ 34601451 (-)
G135668 NA non-coding upstream 342214 34735621 ~ 34736034 (-)
G134668 NA other downstream 518618 33865488 ~ 33865937 (-)
LOC110487618 LOC100380645 other downstream 1159453 33208500 ~ 33225125 (-)
G134102 NA other downstream 1596434 32748208 ~ 32788121 (-)
LOC110514821 NA other downstream 1632977 32738829 ~ 32756992 (-)
LOC110486999 prdm1 other downstream 2735760 31631886 ~ 31648795 (-)
G135575 NA other upstream 210808 34604215 ~ 34604478 (-)
G136399 psmc4 other upstream 912960 35306367 ~ 35307729 (-)
drd2l LOC106582624 other upstream 1280891 35674291 ~ 35700846 (-)
G137479 NA other upstream 1976597 36370004 ~ 36370328 (-)
G137839 LOC106605146 other upstream 2240786 36634193 ~ 36639005 (-)

Expression


Co-expression Network