Gene
RNA
| Item | Value |
|---|---|
| gene id | G135380 |
| gene name | thsd7a |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 34554573 ~ 34555365 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| thsd7a | Predicted to be involved in actin cytoskeleton reorganization. Located in plasma membrane. |
| description |
|---|
| PREDICTED: thrombospondin type-1 domain-containing protein 7A, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU155892 | True | 678 | lncRNA | 0.60 | 2 | 34554573 | 34555365 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110488114 | LOC106582161 | coding | upstream | 89980 | 34432779 ~ 34464593 (+) |
| LOC110488092 | LOC106605261 | coding | upstream | 122349 | 34423390 ~ 34432224 (+) |
| LOC110534788 | NA | coding | upstream | 148688 | 34398314 ~ 34405885 (+) |
| LOC110488078 | LOC106605262 | coding | upstream | 157985 | 34384506 ~ 34396588 (+) |
| LOC110488056 | LOC106605265 | coding | upstream | 188285 | 34350218 ~ 34366288 (+) |
| LOC110488146 | tmem106b | coding | downstream | 70996 | 34626361 ~ 34634974 (+) |
| vwde | LOC106605201 | coding | downstream | 89070 | 34644435 ~ 34646777 (+) |
| si:dkey-30e9.6 | LOC106605205 | coding | downstream | 132744 | 34687955 ~ 34692286 (+) |
| arl4aa | LOC106605206 | coding | downstream | 137245 | 34692610 ~ 34695204 (+) |
| LOC110488257 | LOC106605215 | coding | downstream | 406006 | 34961371 ~ 34964552 (+) |
| G135341 | LOC106582184 | non-coding | upstream | 42860 | 34510480 ~ 34511713 (+) |
| G135316 | NA | non-coding | upstream | 84375 | 34468889 ~ 34470198 (+) |
| G135295 | LOC106582155 | non-coding | upstream | 146096 | 34408152 ~ 34408477 (+) |
| G135261 | NA | non-coding | upstream | 187529 | 34366732 ~ 34367044 (+) |
| G135023 | NA | non-coding | upstream | 225937 | 34276292 ~ 34328636 (+) |
| G135671 | NA | non-coding | downstream | 182917 | 34738282 ~ 34738494 (+) |
| G135685 | NA | non-coding | downstream | 201266 | 34756631 ~ 34757180 (+) |
| G135861 | NA | non-coding | downstream | 339914 | 34895279 ~ 34895499 (+) |
| G135865 | NA | non-coding | downstream | 346195 | 34901560 ~ 34901780 (+) |
| G135873 | NA | non-coding | downstream | 358361 | 34913726 ~ 34914891 (+) |
| G134735 | LOC100136012 | other | upstream | 591915 | 33962417 ~ 33962658 (+) |
| G133760 | LOC106605274 | other | upstream | 740090 | 33814033 ~ 33814483 (+) |
| G133663 | LOC106605282 | other | upstream | 1057288 | 33496454 ~ 33497285 (+) |
| G133473 | LOC106605294 | other | upstream | 1385195 | 33167438 ~ 33169378 (+) |
| G132342 | LOC100136303 | other | upstream | 2667001 | 31834170 ~ 31887572 (+) |
| G135916 | NA | other | downstream | 416275 | 34971640 ~ 34971931 (+) |
| G135920 | LOC106605214 | other | downstream | 417084 | 34972449 ~ 34972801 (+) |
| LOC110488281 | apom | other | downstream | 429607 | 34984948 ~ 35000555 (+) |
| lypc | LOC106584559 | other | downstream | 596395 | 35151760 ~ 35153650 (+) |
