G136044 (LOC106605219)


Basic Information

Item Value
gene id G136044
gene name LOC106605219
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35087279 ~ 35089332 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU156638
GGTGACATCACACTACTGCACCACTTTATGAATAAATAAAGAGGAAGACATCAAATGGACAATGATTGAAGGGTTGAAAGCATAGAAATACAATtgctagtcattctatttctatggctgagagaatgaggggaagagatggataTATTGGAAGTATGTAAAGAGCGGGACAAAGACGGAGGTCGATTCAGGAATACAGCAGATAACCAGCATTAAATAAGATCCCTTTAAAATAACTATACAAAGACATTCAAATAAATCTGTACATTTCATTATTTTCTCTATAAATGGTGTAATTATACACAAACTTACATTTAATCCATTGACTACATTTCTTGTACcctccactttgccaaagcagtACACAGACAACatatcaCAAGTCCAGGCAAAACAGAGTTAGGATGACTCATAGATGATTCACATTTAAAATTAAACATATGGTCAAAAGCATGTCCTTCATGGGAGTATTTCTCAACTGTTGACCACAGTTTAATACTGTATACACAGATCTGAACAGTGTGTTGTTGTAGCCAGTGCTATGCTGTCTTTGTTTGCGTAGTACTGTGTCAAGGACAAGGCACATTTCAGTTTACGACCTAGGAGGCTCTACAGAAACAATATATAgggaaattattttatttaaaaaaatacaaaaacaaaggatcTTAAAATTATTAAAATTTAAACAAGTAAAACATAATATTATGCCAGCGTAATATTTTATGAACAATTTATAAAAATGTTTAGTTAGACCTGAATACTAATACACATATAATAAAAGTCAAAATAAATAGTCTGGAGTGCTTTCTGTCATCAAGCAAGTTGTCAGAATGGAGTTTGTAACTCTCTAGTTTGTTTTGGGGTCCTATTGACTAGAACCCTGAAACCAGGTTTTCAGAATAAGTACAAAAAAACTAATTGTTCTTGCACTTTTTACAATACGCGTTTACATTTATGTACTAAAATAAACCATATCTACAGTATGAAACAAAAATGGAGCGTACATATGAATTCACACTTACTTTTTTGTTGCAAAAGAACATTGATTTTATCTTACACCAGAAATTCAGTTACTACCGTTTAGATTGAATAGGGCTCCCAGTTGTCATGTTTATTGTAGTCTCTTACTTTGATTGTTCCTTCATGCACTAGGACATATGTGTCTAAGGTTTTGTTATTGCCAGAATAAAGGAAGTAAAGCAGCTAATCTCAGAGGCATGTACAGTCTAGGAGTTTCAGTAGTGTTGTAATATGATGCAAAACCTGTCAGGCTCCTTATATTTTCAGGTCTTGTCAACGTACCTGTGCTTCGCTACTACTGAATATCATACCCCCCTGTTTAAAATGTGTTACTTTAGATACAGCAGATCTGATTTtcctcatattttatattttggtCTTTTGCCAGGATAATGAGCTAGCTCGACCGGACACTTATTTTTAATTGATAAACTATAAGCGATAAGGACAGCTCTCACAAGCTGAAGCTCCTGTGATGTTGCTTCAGGAACTGCTGTTGGCGCTGCATTTGCCCATCCCttctttcccttcctccccctctctcattctctccatcctccccagGCAGACTGCCCACATCGCTAAATTCTCCGAGGTGTTCGATGGAATCGCATTTCTCCAGGTCAGAAGCGATGGTCTGCAGACTGAAGACGGAAAGGGAATCtgaccctgctctctctccatgcGTCTCGGgcctctctcccccgctctccctgTATTTCTCCACCAGCCCAATTTTCTTATCCGCCACGCCGCTTCTGTTCACCCTATCGGTCTCCATTGCCCCTCCTTCACATGCCCCGCCCtcgacaccacacaccacactgtccGACTCCGCCCCAATAGGGGGACTCCGCCCACCACAGGCCATGGTTTGTCCACCATCGGTTTGGTTCCGCCCCCGCTGAGCATGGATGGCCTCGCTGATTTGCTCCAGGTTGTGCAAGGCGACAGAGTAGCGGTTTTTCACTTTGGTCACATGCTCCTCCAGCTGCATCACTTTGGTTTTG

Function

NR:

description
SH3 domain-binding protein 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156638 True 2033 lncRNA 0.40 2 35087279 35089332

Neighbor

gene id symbol gene type direction distance location
tnf-alpha tnf-alpha coding upstream 62271 35023007 ~ 35025008 (+)
lt-b2 lt-b2 coding upstream 77573 35004580 ~ 35009706 (+)
LOC110488281 apom coding upstream 87294 34984948 ~ 35000555 (+)
LOC110488257 LOC106605215 coding upstream 122727 34961371 ~ 34964552 (+)
arl4aa LOC106605206 coding upstream 392075 34692610 ~ 34695204 (+)
LOC110533739 ppt2a coding downstream 33471 35122803 ~ 35127514 (+)
LOC110488331 LOC106582353 coding downstream 38638 35127970 ~ 35141476 (+)
LOC110488356 ccdc105 coding downstream 61179 35150511 ~ 35151707 (+)
lypc LOC106584559 coding downstream 62469 35151760 ~ 35153650 (+)
LOC110488375 LOC106605227 coding downstream 83242 35172574 ~ 35180466 (+)
G136021 LOC106582320 non-coding upstream 38325 35042312 ~ 35048954 (+)
G136020 LOC106605218 non-coding upstream 48356 35036470 ~ 35038923 (+)
G136019 NA non-coding upstream 52018 35035019 ~ 35035261 (+)
G136018 NA non-coding upstream 52508 35033905 ~ 35034771 (+)
G136015 NA non-coding upstream 59747 35027186 ~ 35027532 (+)
G136055 NA non-coding downstream 12511 35101843 ~ 35102075 (+)
G136079 NA non-coding downstream 54403 35143735 ~ 35145446 (+)
G136086 NA non-coding downstream 68500 35157832 ~ 35158037 (+)
G136097 NA non-coding downstream 110010 35199342 ~ 35200486 (+)
G135920 LOC106605214 other upstream 114478 34972449 ~ 34972801 (+)
G135916 NA other upstream 115348 34971640 ~ 34971931 (+)
si:dkey-30e9.6 LOC106605205 other upstream 396333 34687955 ~ 34692286 (+)
G134735 LOC100136012 other upstream 1124621 33962417 ~ 33962658 (+)
LOC110488391 LOC106582385 other downstream 91347 35180650 ~ 35184002 (+)
LOC110488639 LOC106605005 other downstream 696359 35785691 ~ 35788114 (+)
LOC100653444 LOC106584591 other downstream 765817 35855149 ~ 35865269 (+)
G136994 NA other downstream 893500 35982832 ~ 36037741 (+)

Expression


Co-expression Network