G136539 (LOC106605190)


Basic Information

Item Value
gene id G136539
gene name LOC106605190
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35553048 ~ 35572904 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU157228
CAATGTTATATTTTATTTTGTGCATTAATTTCATTATTACTTTATTTACTTAGTTTCTTAATTCTATAGTTATACTGTTTGTTGTATAGCCTGTTGGAATCTCAGACGACCAGAACCTTAATAATAATCACCATACTTACTTCACAAACAATAATTATACTAGTTGACTTTACGGACACACAGTAGGCTACTGACACTCGCTCCGCGGTGGTCGTGAATGGGTATGAGGGCTGGACACCCTGCGACCCAGACCCTACTGTTGTCTATTACACATACTAATGCCTCGTTCAAATGCTATCGGAGTTCTCAGAAATTCCTAGTTCCTACTGGGATGTTTCACTTGAATGACCCCCCAAATAGGAATAACAAGTGGGAAATTAGAAAATTATATTGCCAATCTTATCGGTTTAAACATTGTTCCGAATTCAAAAGCACTTGAACACAATCATGTCGGAGTTACAACTTCCCATTTCCCACGAGAATGTGAAGCCAGCATAATACAGCGTTTAAGTGCTCGTCGGTACCTGGAAACTGACATTCTGACTTGCTAACGGTTTGAACGCGTTACAGTAGCCTAAGTATATAACATGATTGGCATGACCGTAATAATCATCATGGAAAGGCCTTGGAAGTGCCATAAGTGTAAGCCAAcataattcattattttacattaacTTGTTTAACATGTAATAAATGCATTATGAAGACAATTGTGTAATTTAGGCTCCACGAAATATGTAATGCGTAATGACGAAAATCGTGTACTGTTGCCTATACGAAAAAATGCCCTTTCTGATTACAAGTGCACCAGTATCCCAAAGTATTAAACGAAATCAAGCATAGAAAACAGCATTGGCATTAATAAAACAATTTTTTTCCCATGAATTAAGTCGCACGTAATGTGTGTATTTTCTCACAAATTCTGTTCAGCAAGTCTAAAACAGTACATATAGGCATacaaatacacattttaaaacaGGATAAAATGAAGGCAACATTTTTGTATATTCATAACGACGAATTAGCCATAAAGAAGAACAACAATTAAATATAGGCTGTCGTGTCAATGGTTTTTGCAAAGGCTTGTAtggagcctagtggttaaattAGTCTTTTCGAACGAAATAAGTAGCACATCAATTCGTGTATTTTCTCACGAATTAAGCAACACAAATACGCACACAATTTGCTAAAATGCATTATGTACACAAATGCACGTATTGAATGTGAGATTGTGTTGCCACCACTCATGTTATCTAcattattaaatgtccatgtgggctgtgCTATGTAGGTAAAACCCTATCGTTCTCTCAAACAGAGAATCAGTGAACATACAAATTCAATTAGTAGAAACGACCGGGATTATACAGTCGCAGTACATTCTAATGACCTAAACATGACATTTCTACctttagattttgtggcatagagaaggttaagatatcagacaggggaggtgaGATAAATAATACTCTGAGCAAAGgagaatgttttgggattttcaccctccaTACACTATTTCCTTAAGGTCTTAAATTTGAAATGCCTATGTATTTTATGTTGTACATTTGAAAATGAATTATGCCCCTATTTCAGATTACTCTGACGTTTTTCTTACACTGTACCCAAGGATTTATGAAAACTTGCTTGGTAGGTtgatgtcctcattgtggttttacagacgtgttttaatacgttttatgtacacactttattcgaatatttatgaaatgcatattgttatatttggtagcactgaTTTGTTTTTCACCTTGCCTCCAACCCCATTCGATGcgtggaacggatgtgggtggggctaggtctacataagggtgctattttaaaaaactcacaaaagcttattaaagatcagtggTACTATCAAGGGCAATGTGCTGGTTACTTCCTTTTCCTCATACATTTATAAATACACACAACCATCAAAAGTAAGGTAGTACCTCAATAAATAGGTTTAGGATTAAATCAAAATGCCAAAACATGAAATGaaAGAGGAGAAAAACAAGAAATGGTTTGACCTCTCGACTTATCCAAACCACGTCATTGTCAGTCCTTCCTTATGGTGACATAACAGAATCGTTACAAAAAGTTAAATGACGCTTCCTTGAAAAACATTACAAAAACATTACCAAAACTTGCTTCTATGTACAACTAGAAAATATTCTTATTGAAAATGTACAACCAccagatacatacagtaccatctgacacagggctgtaaaataaatcATTTACCAAAACTATTAACTACAGTAGTTTCAGTTATTAAACAACATCTCTGTATTATCATAAAACATTCAAACTTGTTTCAGCACATGAGGAAACAACACCAAAACTACAGTAGTTTCAGTTGAGCAAAAGTCCCAGTATCAACATAAAACATTCAATCTGAATTCAGAAAAATGATATAGGAACACATGGCTATACAATACTGCATGCTATCCCCCATGTTTCTAGCGAAAATATGTGCGTCACTCTCCACCACCCATAATAGCCTTAACGTTGGAGTAAAGCGCTGTATCCTCAtctgtctctgctgctggcttaccattctctttctcctcatccttccccatcatcatcatcatcattccactcccctctcctccattttCATCCCCTTCGTTCTTCTTCTCTCGTTTAATTTTGGCGTACTCTGACTCTGCGGTGGTGGTCTTCTTCTCGGCCTCCTCAGGAGTCTTCTTCTTCAGCAGGGAGTAGTTGATACTGGCGTAGTCCACTTCATTTGGTTCTTCCCTTGTGTCAAATTTTCCCGTAGCTCCACTGGTCTGGGTCCCTCCGTTTTCTGCTCCTCCTCTCAGCTCCAACTGCAGAGGGTTCTGTTCGCccccca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157228 True 2875 lncRNA 0.37 2 35553048 35572904

Neighbor

gene id symbol gene type direction distance location
LOC110488492 LOC106605237 coding downstream 172987 35366832 ~ 35380061 (-)
LOC110488508 LOC106605236 coding downstream 195057 35347843 ~ 35357991 (-)
LOC118939540 NA coding downstream 228366 35307742 ~ 35324682 (-)
LOC110488446 LOC106582421 coding downstream 287400 35240548 ~ 35265648 (-)
si:ch211-225p5.8 LOC106605232 coding downstream 347920 35199344 ~ 35205128 (-)
LOC118939553 LOC106582593 coding upstream 34637 35607541 ~ 35609429 (-)
LOC110534863 LOC106605168 coding upstream 36725 35609629 ~ 35610797 (-)
LOC110488593 LOC106605167 coding upstream 56645 35629549 ~ 35663662 (-)
LOC110488606 LOC106605166 coding upstream 91344 35664248 ~ 35668411 (-)
drd2l LOC106582624 coding upstream 101387 35674291 ~ 35700846 (-)
G136433 LOC106605238 non-coding downstream 14325 35422866 ~ 35538723 (-)
G136437 NA non-coding downstream 54735 35493817 ~ 35498313 (-)
G136435 NA non-coding downstream 75608 35428999 ~ 35477440 (-)
G136432 LOC106582469 non-coding downstream 126079 35426238 ~ 35426969 (-)
G136371 NA non-coding downstream 268274 35245049 ~ 35284774 (-)
G136553 NA non-coding upstream 752 35573656 ~ 35573936 (-)
G136562 NA non-coding upstream 6000 35578904 ~ 35579164 (-)
G136581 NA non-coding upstream 18147 35591051 ~ 35591288 (-)
G136669 NA non-coding upstream 24618 35597522 ~ 35597733 (-)
G136671 NA non-coding upstream 25762 35598666 ~ 35599028 (-)
G136399 psmc4 other downstream 245319 35306367 ~ 35307729 (-)
G135575 NA other downstream 948570 34604215 ~ 34604478 (-)
G134668 NA other downstream 1687111 33865488 ~ 33865937 (-)
LOC110487618 LOC100380645 other downstream 2327946 33208500 ~ 33225125 (-)
G134102 NA other downstream 2764927 32748208 ~ 32788121 (-)
G137479 NA other upstream 797100 36370004 ~ 36370328 (-)
G137839 LOC106605146 other upstream 1061289 36634193 ~ 36639005 (-)
G138080 NA other upstream 1252962 36825792 ~ 36828397 (-)
pnrc2 LOC106605140 other upstream 1272029 36844929 ~ 36849373 (-)

Expression


Co-expression Network