G137203


Basic Information

Item Value
gene id G137203
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36143920 ~ 36146850 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU157939
TGAAAGATACACTTCAAAAACGTAAGCAAAGTAACACTAAAAGGCCTAAAGAGAAATACAAAAGAAAGACAtttaaaactaaaataaaaaagACCTGTTGGTACAACAGAGAGTTTGAAACATACagagtagagacacacagagacagagaccgaaaCAGAGCCAGAGGCATGGAACTCATGTGGCTACCTTGTTCGTATCATCAAACACCCATTGATTTTAGCAGGTGCCTCAGGACTCAAAATGGTATCACAGCACACAATCCTGACTGACATTCAATTAAAAAGTAATGACACAAACCGACCGCACGTCAAATACAAAATAACCTCAAGATACAGATGTAACAAATAGGAAAACCTTTAAAAAGTCCATCATCCTTGGCCACTGACAAAATCGGTCTTCAAACCAGTTTTAACACTGGGAAAACAGCATCCGATATTCTCTCGAGCAAACGGGATTTCAAAACCTCAACATGGACTGCGAATGGACTAAAAGCAAGCAGCGTCTGCTTGCACATCAAAACAGAGAGCTAAATGGAGTCAacatgtcttaaagtatttgTCTGTGGGTAATAGGTAGGAAAAGCCTATTGAAGTTCTGAACAGGGTTGACGACCCCTTCAAAGCTCCATGCCTCTGACCCTAGAGTGAGGTGGGAACGACTAACAGACAGTGGGCAAACAGAACAGCAACTCATTATTACAACACCTTGATTCGTTACACAGGTACAAGTCTAAGTACAGCACATAGAACCCTCAGGCTCCTGTTCTTACATCCATACACGTGGGGAAACATACACTTTTGTATGTTGGGGCTCACCAACTACTGTAGCACTGTTAGTGGTTTGAAAATAAACACGAGGATGACATTTTGGAGTTGGGCCTTTTTTTGTACTCAACTCAGGCATTCTGTAGTTGTAAATAAAACCCAACAACGAAGTAAGAACACACTTAAGACTGAGGATTGCATTTTTAAGTGGAATGGGACTTTAGTCTCTACTCCTTACTGTGTAAGTCTCTGGCACAAGAAAAAAAAACTCCAGAGGAGACATGAAAGCACAGAAGCCACACCTAACCATACATCCTCTGCCTTagcaccatccctccctccctccttttcccctctatTCTCACCCACCTGTACTCCACCAGGCCAGGGGAGTTTACATGGCTAACACATTAGCATCTCTGGATGAGGAAGTCAGTTTTTACAAGGCTCAGCTCAGTCCGTGTGGTTCAGTGAAGGTTCCCTACCCCTACAGAGATGAGATGCAACATGTGGGGGTGGTATCAACAAGATGGGAGGAGAGAaccggagaggagagagggactagaGAGTACAAGAAGGTGATGAGGACTTAATGAGAAGGCCTCTTCCCCCAAACAGAAAGCAGGGGTCTAACATAAGTAATACCTAATTTAAAAACAGATGCCCCTGCTCAACTGTGCCCCTCCGTCCGCCCTCCAACACGTTGCTGTGCTTGCGTGTTTGGGGAGGATAAGTCTTCAACatggagggggggaggggttTAAGGCCTCGTCCCCAAGCTGCACCTCCACCATGCTGCCAATGTTGCGGAGACTCTAGCTAGCTGCTCGTTTATGCACTCAATAAA
>TU157938
CAAAAGAAAGACAtttaaaactaaaataaaaaagACCTGTTGGTACAACAGAGAGTTTGAAACATACagagtagagacacacagagacagagaccgaaaCAGAGCCAGAGGCATGGAACTCATGTGGCTACCTTGTTCGTATCATCAAACACCCATTGATTTTAGCAGGTGCCTCAGGACTCAAAATGGTATCACAGCACACAATCCTGACTGACATTCAATTAAAAAGTAATGACACAAACCGACCGCACGTCAAATACAAAATAACCTCAAGATACAGATGTAACAAATAGGAAAACCTTTAAAAAGTCCATCATCCTTGGCCACTGACAAAATCGGTCTTCAAACCAGTTTTAACACTGGGAAAACAGCATCCGATATTCTCTCGAGCAAACGGGATTTCAAAACCTCAACATGGACTGCGAATGGACTAAAAGCAAGCAGCGTCTGCTTGCACATCAAAACAGAGAGCTAAATGGAGTCAacatgtcttaaagtatttgTCTGTGGGTAATAGGTAGGAAAAGCCTATTGAAGTTCTGAACAGGGTTGACGACCCCTTCAAAGCTCCATGCCTCTGACCCTAGAGTGAGGTGGGAACGACTAACAGACAGTGGGCAAACAGAACAGCAACTCATTATTACAACACCTTGATTCGTTACACAGGTACAAGTCTAAGTACAGCACATAGAACCCTCAGGCTCCTGTTCTTACATCCATACACGTGGGGAAACATACACTTTTGTATGTTGGGGCTCACCAACTACTGTAGCACTGTTAGTGGTTTGAAAATAAACACGAGGATGACATTTTGGAGTTGGGCCTTTTTTTGTACTCAACTCAGGCATTCTGTAGTTGTAAATAAAACCCAACAACGAAGTAAGAACACACTTAAGACTGAGGATTGCATTTTTAAGTGGAATGGGACTTTAGTCTCTACTCCTTACTGTGTAAGTCTCTGGCACAAGAAAAAAAAACTCCAGAGGAGACATGAAAGCACAGAAGCCACACCTAACCATACATCCTCTGCCTTagcaccatccctccctccctccttttcccctctatTCTCACCCACCTGTACTCCACCAGGCCAGGGGAGTTTACATGGCTAACACATTAGCATCTCTGGATGAGGAAGTCAGTTTTTACAAGGCTCAGCTCAGTCCGTGTGGTTCAGTGAAGGTTCCCTACCCCTACAGAGATGAGATGCAACATGTGGGGGTGGTATCAACAAGATGGGAGGAGAGAaccggagaggagagagggactagaGAGTACAAGAAGGTGATGAGGACTTAATGAGAAGGCCTCTTCCCCCAAACAGAAAGCAGGGGTCTAACATAAGTAATACCTAATTTAAAAACAGATGCCCCTGCTCAACTGTGCCCCTCCGTCCGCCCTCCAACACGTTGCTGTGCTTGCGTGTTTGGGGAGGATAAGTCTTCAACatggagggggggaggggttTAAGGCCTCGTCCCCAAGCTGCACCTCCACCATGCTGCCAATGTTGCGGAGACTCTAGCTAGCTGCTCGTTTATGCACTCAATAAATACAGCATAAAATATTTTGCAATATATATTTCATATACATattaaaaataacatttaaatagGAGGACAAAATAAAATGTTCGGCTCAAGTCAGATAAGtgttaagacaaaaaaaaactaaacaagagAATCTTAGTTATACTTCCGTCTCTAAAACAGTTATGAGAATATCATAATCAGGTATTAATCAAGCATTATACTGTAATAACCAAAGCAATATTTGCAGTTTCTCCTCTCATGTAGTATAACGTATGCAGCATATAAAGGTAAGTGAGGCGCATTGTTTTTTTAATCTCTTGTAAAAAAGATACCACCTCCCTGGACTGATGGGTACCCCAAATGACTCATACAGACCCTCTGAGTCTTATTCCACACCCGAACTGCCCCAAAACCCCAATGAAAGTGGGCCCACTATCCTTCCATTAAGGACAAGAGACACGCGGCAGGGTGAGGCATTGCACTGGGATGAGAATGCCATGCCGACATCCTAATGCGAATGCCATTACTTCCAACTTCCTTACATTGAAACACTTAAAAACCGTTGGTGGTTTCAGATTCTTAATGAGAAACCACAAAACGCAGGCCGACTCAAAACAGTCATCATCATCAGCGGAGTCACATGAGCTGGAGGCACACCTTTAAAATGACCACTTAGTAGCGATAGTAACCGTTTTGTTTGGTGTCGTAATCCAATTCCCAGAGGAGGAAAATCTCCTCAAATCACATAACAAGTCCTCGACACGCCACTGTATCTGGGAGGCGGGGATTGGAGGAGGTACAAAGACAGAAAACGTTGTGGCTGTGTGTCCGAGTGAGAGTGGCAGTCTATAAAGTGCTGTGCTATGTTCGTCATTCGTGGCCCAggctgtgtcacacacacacacatcggttTTAACTATGACCTCACTTGTCAACGCAAGTTCCACTGTAGCAACCAACCGAGTCGATTGGTCCAAACTCAAAATGCACCACTAAGTGAACGCTCAACCACAATCATATACTCTGTCTTTATGCATCTTGGTATGCGTGCATACATATAAataatgtgtgtgtactgtgcatGTGTTTCTGCATTGCAAtgcttttatatttttcttcaaaaATGAGATAAACGTCTTTGCCATTTGACTTTTGTTTTACAGCACCACCATAAAGAAAGGCACTTCCTGTGGACTTCACTCTGCCATAGATTTACCTTCCGCGCCGAAAAGGACATACAACTCAAAATCCAGTATATCTGTGCGTCACAGGCAATGGAATGAACACACATAGCTACTTTTCCATAGAGTATAGCAATCTCTGGGTTGATGTTTAAGA
>TU157940
CAAAAGAAAGACAtttaaaactaaaataaaaaagACCTGTTGGTACAACAGAGAGTTTGAAACATACagagtagagacacacagagacagagaccgaaaCAGAGCCAGAGGCATGGAACTCATGTGGCTACCTTGTTCGTATCATCAAACACCCATTGATTTTAGCAGGTGCCTCAGGACTCAAAATGGTATCACAGCACACAATCCTGACTGACATTCAATTAAAAAGTAATGACACAAACCGACCGCACGTCAAATACAAAATAACCTCAAGATACAGATGTAACAAATAGGAAAACCTTTAAAAAGTCCATCATCCTTGGCCACTGACAAAATCGGTCTTCAAACCAGTTTTAACACTGGGAAAACAGCATCCGATATTCTCTCGAGCAAACGGGATTTCAAAACCTCAACATGGACTGCGAATGGACTAAAAGCAAGCAGCGTCTGCTTGCACATCAAAACAGAGAGCTAAATGGAGTCAacatgtcttaaagtatttgTCTGTGGGTAATAGGTAGGAAAAGCCTATTGAAGTTCTGAACAGGGTTGACGACCCCTTCAAAGCTCCATGCCTCTGACCCTAGAGTGAGGTGGGAACGACTAACAGACAGTGGGCAAACAGAACAGCAACTCATTATTACAACACCTTGATTCGTTACACAGGTACAAGTCTAAGTACAGCACATAGAACCCTCAGGCTCCTGTTCTTACATCCATACACGTGGGGAAACATACACTTTTGTATGTTGGGGCTCACCAACTACTGTAGCACTGTTAGTGGTTTGAAAATAAACACGAGGATGACATTTTGGAGTTGGGCCTTTTTTTGTACTCAACTCAGGCATTCTGTAGTTGTAAATAAAACCCAACAACGAAGTAAGAACACACTTAAGACTGAGGATTGCATTTTTAAGTGGAATGGGACTTTAGTCTCTACTCCTTACTGTGTAAGTCTCTGGCACAAGAAAAAAAAACTCCAGAGGAGACATGAAAGCACAGAAGCCACACCTAACCATACATCCTCTGCCTTagcacca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157939 False 1614 lncRNA 0.44 1 36143920 36145533
TU157938 False 2873 lncRNA 0.45 1 36143978 36146850
TU157940 True 1040 lncRNA 0.47 1 36143978 36145017

Neighbor

gene id symbol gene type direction distance location
LOC110533753 LOC106605184 coding upstream 21670 36118066 ~ 36123229 (+)
LOC110488747 LOC106605155 coding upstream 30798 36109289 ~ 36113122 (+)
iglon5 iglon5 coding upstream 74508 35928900 ~ 36069412 (+)
LOC100653444 LOC106584591 coding upstream 278651 35855149 ~ 35865269 (+)
LOC110488684 LOC106605158 coding upstream 298034 35828977 ~ 35845886 (+)
LOC110488805 LOC106605152 coding downstream 70170 36217020 ~ 36227769 (+)
LOC101268898 NA coding downstream 82665 36229498 ~ 36233187 (+)
LOC118936744 LOC106605183 coding downstream 128891 36275741 ~ 36278586 (+)
LOC110488849 LOC106605147 coding downstream 208033 36354883 ~ 36405310 (+)
LOC110488866 LOC106582899 coding downstream 273901 36420751 ~ 36656060 (+)
G137190 NA non-coding upstream 13801 36129897 ~ 36130119 (+)
G137183 NA non-coding upstream 17683 36125914 ~ 36126237 (+)
G137070 NA non-coding upstream 27052 36116661 ~ 36116868 (+)
G137067 NA non-coding upstream 29502 36114187 ~ 36114418 (+)
G137205 LOC106605151 non-coding downstream 6207 36153057 ~ 36154498 (+)
G137206 NA non-coding downstream 8152 36155002 ~ 36155236 (+)
G137207 NA non-coding downstream 8407 36155257 ~ 36155582 (+)
G137210 NA non-coding downstream 10888 36157738 ~ 36158260 (+)
G137214 NA non-coding downstream 16392 36163242 ~ 36163509 (+)
G137058 LOC106605156 other upstream 43643 36099611 ~ 36100277 (+)
G136994 NA other upstream 106179 35982832 ~ 36037741 (+)
LOC110488639 LOC106605005 other upstream 356450 35785691 ~ 35788114 (+)
LOC110488391 LOC106582385 other upstream 959924 35180650 ~ 35184002 (+)
G139004 NA other downstream 1630211 37777061 ~ 37824010 (+)
G139089 LOC106605123 other downstream 1772885 37919735 ~ 37940714 (+)
G139101 NA other downstream 1796892 37943742 ~ 37944012 (+)
G139179 NA other downstream 1904509 38051359 ~ 38051744 (+)

Expression


Co-expression Network