G137234 (LOC106582818)


Basic Information

Item Value
gene id G137234
gene name LOC106582818
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36189266 ~ 36192683 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU157973
GCGATGTTGCGCCTCTGTTTACAAACTCTGTGCTTCGACTTTAGCCAACGGGAATTAACTATATTACAGATAACACAGAAACCATAGTGAAGATAAGAACTGCATCTGGATCAGTGGCGCTGGGCTTACCCAAGCTGAATTTGAACACAGAGGGGCTTGGGGGGGACTAACCCCAACTGCAAAGGCCCCGCTACATTGGGTTCCCCTGACTCCTGTTGTACCAGGGGCTTGGAACAGAACACTGGCATCCGCCACGCGGATAGATGGTAGCGGGCACGGAAGGCCACAAGGCGGGCATAGTAGGCTGGCGCGGGGATGGAGACGGAGCGGGTACAGCGCACGTAGGTGTGGCACAGCTGGTAGGTGAGGATTTGCAGCTCGTCGGCGGTGAAACGATTGTCGTCCCACAGGACGTAGTAATGTGAGGGCCGACTAGTCC
>TU157974
CTCCCCAACAGAGTCCCCATACTATTACACCATACAGAGCCAAAATAAGTTGCTTCCATTTCCTTTCATTCAACCTATTGGGAAGTGCTATGACAAAGACTGTTCTTGATCAGTGGCTTTTATATTGCTTAGTCAGTGTGGAGCAGATTCGCTTGTGTCCTCATCATGATGCTTTTCCCAGAGTGAAGATAAGAACTGCATCTGGATCAGTGGCGCTGGGCTTACCCAAGCTGAATTTGAACACAGAGGGGCTTGGGGGGGACTAACCCCAACTGCAAAGGCCCCGCTACATTGGTGAGCCCAAATTCATTACAGGTTATATACAAATTACCTGGGACATGTGGGGTCAGTAAAATGGTGTACAAAAGCATTTTGATTGCGTAAATTCATAAACATGAATTCCTCTATCGTCATTCCCTTCCAACATAAAGGGGCTCTACAACCCATCAGACATGTTTGGAGGCGCTTGAAGGCCAAGAAGTGAAAGTCGTCAGACTACTTTTCGCATAGTACCTTGAGGATCCACTCTGACACTACTCAACACAATACAGAAAACAAAAAGCAGCCTTTCAGTTCACCGTTTACACAAAAGAGGCTATGACTGAAAGGCAGAAGTGAGCGTAATAAGCTCCTAGGAAAACTAAGGTGGCTCAGAATACCCAGTCATAATAAAAATGTGTTTCATGCATTTCATAAAGTCAGAAAGTGATCAGAAGTGAAGGCAGAGCATATTGAGTAAGTACCCCCCAATAACCTGTGTAGCAAACCCCTATCTGTGTTGTCCATGCACACAGCGCACCAATGGGGAATCATACACTAGGCTGGGAGGAGGGGAGCTGAGGCAGAGGGTTGAGCGGGGTATGGTTAGGGGAAAAATGGGTGGTGGTGTTGGAAGGAGGGGGCAAGTATTCATGTGGGAGTATTAAGGGGGCAAGTGCATGCATGGATGCGGCTCGGTACACACTCCGTAGGAGAATGTGACAGGGTGAGGAGGCATGAGTGTGCTTGTGTTGACGATGGTGTGGTCGATGTCTGTAGGTAGGACAAGCTATTTACAATATTAAAAAAAGAGACGCTGTGTGcgcgtacagtgtgtgtgtgtgtatgtcaacgTAGTGTTTTGGTGTACGTCGTCTCCATTGACATAGGTTGGAATGTGTACCTAGAATGTGTAGAATGATCATGTAGCCAAGGTCAAGTGCTAAAAGTGAGGGAGAAACACTTCATTCAGTGTTCTCTGGCCCACGTCTTTTTGCAGCTTTCACACCTACAAAGACAAGATGAagaccttgtattgctactgttACTCTATTGGTTCAGCAAGCTTAGAGAGGTTGTAGGTGTGAGAATATGTAttatgtaggtaggtaggggtGTGTGTAGGCCTGTGTGTGAAGCCTCAGGGAAGACAAATCTCCCCATTCTGAAGTAACAAACCAATCAGGTAAAGAAAGTGCCTCGTAATTCCTCCGTAGAGTAAATGCATTCTGACACAAAATATTATCTTCTTCCTGTTTACATAGGTGCCCATTTTCCATTGGTAAGCATCACATTAggctggataataataataataatgctggTTTAGGTGCATGGGGTGTGAGTATATTCAATACACTCAATGCAATGGTCCCTCTAACTTCTACATTGACCTCTCTCTACTGGCTAATTCTAAGAGGAGACTCCCAACCTGCACAGATGAAGTGAAGAAGCACTTAGTCTAATGTATCTACAACATgctacacctgctctttctatttCCACAATTAAGAGCAGAGGGCTAGtctcacacagacaaacacttcATATAGGTGCAGGGTGAGCGGCGTTGACTACATGCTAATCTCTAAGTGCTAATGTACCATACATCCCGTTGCGCGCATCAAAGccataaaaaaaagagagaatggCAACATAAGAATGGAGTTCATGATAAAAAGTTAACAATAATAAGTGTGTCCTTTTTGTCACCCTTCTCCCGCCCAGGGTTCCCCTGACTCCTGTTGTACCAGGGGCTTGGAACAGAACACTGGCATCCGCCACGCGGATAGGTAAGAGGCAGCATTGTGGTGGCAGTCAAAAGTCTCGGGGCAGCTCAGCGCCCGTTTTCCTCCCCTCCGTATTGCATACATAGGAGTGTGGAAGGTCGCATACAATACAATAATACCCTCTTTTTGTTTTTAAGTCAACATAAAAACATAGTCCTGGgaaagtaaataaaaaataaacatataatatcaataatgataataataactgTAGTGCAGGACGCTGCAGAGTCTGCCTGGGTTGATCAGGTGAGGGATGTATAGTTCTGGTACTGGGGTGGTTTGGctgtggtgggtcagtcatgagaGGGTATGTGGAGTGTGTGGGTGGTCACAGtcatggagggaggaggaaaggtgGAAGGCTTCCTGTGGGCTCCCAGGCCCCTCACCGAGGGATGGTGAGTCTTAAGGAcagtggtggtggcggtggtgtggGGTGGTGCTCAGGCGAAGTACATGGTCCTCAGCGTGTCGTGGTGAATCTGCACCGCCTTGGCCAGAGCCTGGGGGTCCCGACCGTTACTCTGACCAGAGACATGGCTCCCCTCCCCACTACAGtatggacagaaagacacaggaCGCAATAAGTACCGAATAAGATCTGGAAATGTTATGGTGCTTACCCTTTTCATTAATTTTAGGTTGAGGCATACAGCTGGATCTACAAAACCGATGGCATGGAACTTGAATTCATCTTAACATTAGACTACATTTGAAGTCAACATCTGACAACAGATTTAAGTGGAACGTCCCTCTAAATGTTAACTAGACCACCATGCTCACCTGTCATGCTCCTTGTCCACCAGATGGTAGCGGGCACGGAAGGCCACAAGGCGGGCATAGTAGGCTGGCGCGGGGATGGAGACGGAGCGGGTACAGCGCACGTAGGTGTGGCACAGCTGGTAGGTGAGGATTTGCAGCTCGTCGGCGGTGAAACGATTGTCGTCCCACAGGACGTAGTAATGTGAGGGCCGACTAGTCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157973 False 439 lncRNA 0.56 4 36189266 36192683
TU157974 True 3033 lncRNA 0.47 2 36189626 36192683

Neighbor

gene id symbol gene type direction distance location
LOC110533753 LOC106605184 coding upstream 67016 36118066 ~ 36123229 (+)
LOC110488747 LOC106605155 coding upstream 76144 36109289 ~ 36113122 (+)
iglon5 iglon5 coding upstream 119854 35928900 ~ 36069412 (+)
LOC100653444 LOC106584591 coding upstream 323997 35855149 ~ 35865269 (+)
LOC110488684 LOC106605158 coding upstream 343380 35828977 ~ 35845886 (+)
LOC110488805 LOC106605152 coding downstream 24337 36217020 ~ 36227769 (+)
LOC101268898 NA coding downstream 36832 36229498 ~ 36233187 (+)
LOC118936744 LOC106605183 coding downstream 83058 36275741 ~ 36278586 (+)
LOC110488849 LOC106605147 coding downstream 162200 36354883 ~ 36405310 (+)
LOC110488866 LOC106582899 coding downstream 228068 36420751 ~ 36656060 (+)
G137239 NA non-coding upstream 502 36188035 ~ 36188764 (+)
G137238 NA non-coding upstream 1587 36187443 ~ 36187679 (+)
G137237 NA non-coding upstream 2185 36186865 ~ 36187081 (+)
G137227 NA non-coding upstream 12989 36176000 ~ 36176277 (+)
G137225 LOC107394889 non-coding upstream 13384 36175132 ~ 36175882 (+)
G137236 NA non-coding downstream 3370 36196053 ~ 36196517 (+)
G137240 NA non-coding downstream 4665 36197348 ~ 36197577 (+)
G137245 LOC106605149 non-coding downstream 9805 36202488 ~ 36207731 (+)
G137223 LOC107707628 non-coding downstream 17329 36210012 ~ 36210308 (+)
G137249 NA non-coding downstream 20795 36213478 ~ 36213816 (+)
G137058 LOC106605156 other upstream 88989 36099611 ~ 36100277 (+)
G136994 NA other upstream 151525 35982832 ~ 36037741 (+)
LOC110488639 LOC106605005 other upstream 401796 35785691 ~ 35788114 (+)
LOC110488391 LOC106582385 other upstream 1005270 35180650 ~ 35184002 (+)
G139004 NA other downstream 1584378 37777061 ~ 37824010 (+)
G139089 LOC106605123 other downstream 1727052 37919735 ~ 37940714 (+)
G139101 NA other downstream 1751059 37943742 ~ 37944012 (+)
G139179 NA other downstream 1858676 38051359 ~ 38051744 (+)

Expression


Co-expression Network