G137256


Basic Information

Item Value
gene id G137256
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36243604 ~ 36248682 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU158002
AGTTCGAGTCACACTGTTGGGTACCCAAACTACCAGGTGCTCTTCGGTTGTCTGGACGCTAGATGGTTGGAATTTAGACTGGCCAGTTGGAGTAGCAGCTACAGGATCTTTAACACAGAGCCTGTGGAAGGTGTGGAGGATCCaacagtttttttgttttgttttacgaCTGCATTCCGGACCGCTTTTTTCCCAGGAGCAAGTCGGAAACCTGAAATTTCTAGTAATTTATTTTTTGTGCATTCCTCCTTTTTTTGCCTGAACAAAAGGGTGTAATCACAACCAGGTCTCCAGACCAGAGCTGcatcaacacaccacacaaaGAAACCAACCCCAGACCCACTACAGACATGATCATCAGACTGGGCAGACTGACACCTGGATACTTCCGCCTCCTACAGAGACAGGTGGCGGGTGAGGTGCAGACCCAGCCACAGGACCGCGTGGTCAACCAGATAGCCATGATGCTGGCCATCATGGGCCTAAGCCTGTCCTACTACAGTGCCAAACGGATGACCGAGAAGGTCCAGAGGCTCCAGAAGAGAAGAGATCCCCATACACCCTGAACCTGGAGAGAAGACGAACCAACGCAGAGATGTTgcggagaggagacatggagatgTCGGTGTCCAGAACAACACCTTTTCACAACCAATCAGTCATAGTCACGTCGTTCACACACTGGAGTTTTACTGGGATCACTCTCAATGCGAGGAGAGTTCGGGGGCTGCTGCTTTTAAGGGTATCTTGTTAATTTTTCACACCaatttggggtgtgtgtgtgtgtgtgtgtgtgaagaaagGCCCACGGTGGGGTTCGTGTGGTCCTGAtaaggtcgggggggggggggggggtaaaaagtACTACCAGCTGTCTATGGTAAGGCTGGGCCTGAGCTTTAGTTGTTAAGGTACATGCGTGCAAGATGCCATCAATACTGTTCTGCGCTAAAAAGGGATAGAAAAATGCCAAACGAATTATTCTAATGTACTGTGAAACTTGCCAGTGCTCCAAGCATATGACTGTGTGTAAAATAACTGAACAGTAATAATTTTTTAAGGGAAGGCTATCTGCATTTGAGATGTATCTGGTAATGACTGAAGGCAGGCCCATAGTGTGAGGAGAAAGCAACCCTCTTAGGTTTTTGTCATTTCTtatagttaaataaaagtgagcCATGTGAAGTAGATGTGGAGGAGGAGTCTCAAACTGGTCAATAATTCCACACATGTTTAATATCTGTTAATGTcagacacaaaaaaaaaacagtgaaAGTGAAATGCAGTATTTGAACGTTTTAGGAACTTGCTTATCCAAATCTATGAAAAGGCACTTTATCCAAATAACAACTTTGTTTTTCCCACAATGTTTCCAGTTTAATCGATTTGAGTCTTGATAAAGAACGTTGGCTTTCTTTAAAGAACTCGATCTGCAATAGCTACTAGGTGTTACCACAGAATATTCTAACTTCAGTAAACGTTGTATGGGTCTACATAAAACTTAAGATTTCATTAATACTGTCACTTTTAGTTTTTTAAAGAATCATAACATGAATGTATATTTCTGTGATGTTTAGAAAAATCAAATAAAGCTGTGACTTGAAT
>TU158003
AGTTCGAGTCACACTGTTGGGTACCCAAACTACCAGGTGCTCTTCGGTTGTCTGGACGCTAGATGGTTGGAATTTAGACTGGCCAGTTGGAGTAGCAGCTACAGGATCTTTAACACAGAGCCTGTGGAAGGTGTGGAGGATCCaacagtttttttgttttgttttacgaCTGCATTCCGGACCGCTTTTTTCCCAGGAGCAAGTCGGAAACCTGAAATTTCTAGTCTCCAGACCAGAGCTGcatcaacacaccacacaaaGAAACCAACCCCAGACCCACTACAGACATGATCATCAGACTGGGCAGACTGACACCTGGATACTTCCGCCTCCTACAGAGACAGGTGGCGGGTGAGGTGCAGACCCAGCCACAGGACCGCGTGGTCAACCAGATAGCCATGATGCTGGCCATCATGGGCCTAAGCCTGTCCTACTACAGTGCCAAACGGATGACCGAGAAGGTCCAGAGGCTCCAGAAGAGAAGAGATCCCCATACACCCTGAACCTGGAGAGAAGACGAACCAACGCAGAGATGTTgcggagaggagacatggagatgTCGGTGTCCAGAACAACACCTTTTCACAACCAATCAGTCATAGTCACGTCGTTCACACACTGGAGTTTTACTGGGATCACTCTCAATGCGAGGAGAGTTCGGGGGCTGCTGCTTTTAAGGGTATCTTGTTAATTTTTCACACCaatttggggtgtgtgtgtgtgtgtgtgtgtgaagaaagGCCCACGGTGGGGTTCGTGTGGTCCTGAtaaggtcgggggggggggggggggtaaaaagtACTACCAGCTGTCTATGGTAAGGCTGGGCCTGAGCTTTAGTTGTTAAGGTACATGCGTGCAAGATGCCATCAATACTGTTCTGCGCTAAAAAGGGATAGAAAAATGCCAAACGAATTATTCTAATGTACTGTGAAACTTGCCAGTGCTCCAAGCATATGACTGTGTGTAAAATAACTGAACAGTAATAATTTTTTAAGGGAAGGCTATCTGCATTTGAGATGTATCTGGTAATGACTGAAGGCAGGCCCATAGTGTGAGGAGAAAGCAACCCTCTTAGGTTTTTGTCATTTCTtatagttaaataaaagtgagcCATGTGAAGTAGATGTGGAGGAGGAGTCTCAAACTGGTCAATAATTCCACACATGTTTAATATCTGTTAATGTcagacacaaaaaaaaaacagtgaaAGTGAAATGCAGTATTTGAACGTTTTAGGAACTTGCTTATCCAAATCTATGAAAAGGCACTTTATCCAAATAACAACTTTGTTTTTCCCACAATGTTTCCAGTTTAATCGATTTGAGTCTTGATAAAGAACGTTGGCTTTCTTTAAAGAACTCGATCTGCAATAGCTACTAGGTGTTACCACAGAATATTCTAACTTCAGTAAACGTTGTATGGGTCTACATAAAACTTAAGATTTCATTAATACTGTCACTTTTAGTTTTTTAAAGAATCATAACATGAATGTATATTTCTGTGATGTTTAGAAAAATCAAATAAAGCTGTGACTTGAAT
>TU158004
AGTTCGAGTCACACTGTTGGGTACCCAAACTACCAGGTGCTCTTCGGTTGTCTGGACGCTAGATGGTTGGAATTTAGACTGGCCAGTTGGAGTAGCAGCTACAGGATCTTTAACACAGAGCCTGTGGAAGGTGTGGAGGATCCaacagtttttttgttttgttttacgaCTGCATTCCGGACCGCTTTTTTCCCAGGAGCAAGTCGGAAACCTGAAATTTCTAGTAATTTATTTTTTGTGCATTCCTCCTTTTTTTGCCTGAACAAAAGGGTGTAATCACAACCAGGTCTCCAGACCAGAGCTGcatcaacacaccacacaaaGAAACCAACCCCAGACCCACTACAGACATGATCATCAGACTGGGCAGACTGACACCTGGATACTTCCGCCTCCTACAGACAGGTGGCGGGTGAGGTGCAGACCCAGCCACAGGACCGCGTGGTCAACCAGATAGCCATGATGCTGGCCATCATGGGCCTAAGCCTGTCCTACTACAGTGCCAAACGGATGACCGAGAAGGTCCAGAGGCTCCAGAAGAGAAGAGATCCCCATACACCCTGAACCTGGAGAGAAGACGAACCAACGCAGAGATGTTgcggagaggagacatggagatgTCGGTGTCCAGAACAACACCTTTTCACAACCAATCAGTCATAGTCACGTCGTTCACACACTGGAGTTTTACTGGGATCACTCTCAATGCGAGGAGAGTTCGGGGGCTGCTGCTTTTAAGGGTATCTTGTTAATTTTTCACACCaatttggggtgtgtgtgtgtgtgtgtgtgtgaagaaagGCCCACGGTGGGGTTCGTGTGGTCCTGAtaaggtcgggggggggggggggggtaaaaagtACTACCAGCTGTCTATGGTAAGGCTGGGCCTGAGCTTTAGTTGTTAAGGTACATGCGTGCAAGATGCCATCAATACTGTTCTGCGCTAAAAAGGGATAGAAAAATGCCAAACGAATTATTCTAATGTACTGTGAAACTTGCCAGTGCTCCAAGCATATGACTGTGTGTAAAATAACTGAACAGTAATAATTTTTTAAGGGAAGGCTATCTGCATTTGAGATGTATCTGGTAATGACTGAAGGCAGGCCCATAGTGTGAGGAGAAAGCAACCCTCTTAGGTTTTTGTCATTTCTtatagttaaataaaagtgagcCATGTGAAGTAGATGTGGAGGAGGAGTCTCAAACTGGTCAATAATTCCACACATGTTTAATATCTGTTAATGTcagacacaaaaaaaaaacagtgaaAGTGAAATGCAGTATTTGAACGTTTTAGGAACTTGCTTATCCAAATCTATGAAAAGGCACTTTATCCAAATAACAACTTTGTTTTTCCCACAATGTTTCCAGTTTAATCGATTTGAGTCTTGATAAAGAACGTTGGCTTTCTTTAAAGAACTCGATCTGCAATAGCTACTAGGTGTTACCACAGAATATTCTAACTTCAGTAAACGTTGTATGGGTCTACATAAAACTTAAGATTTCATTAATACTGTCACTTTTAGTTTTTTAAAGAATCATAACATGAATGTATATTTCTGTGATGTTTAGAAAAATCAAATAAAGCTGTGACTTGAAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158002 False 1605 lncRNA 0.42 3 36243604 36248682
TU158003 False 1542 lncRNA 0.44 3 36243604 36248682
TU158004 True 1603 lncRNA 0.43 3 36243604 36248682

Neighbor

gene id symbol gene type direction distance location
LOC101268898 NA coding upstream 10442 36229498 ~ 36233187 (+)
LOC110488805 LOC106605152 coding upstream 15835 36217020 ~ 36227769 (+)
LOC110533753 LOC106605184 coding upstream 121354 36118066 ~ 36123229 (+)
LOC110488747 LOC106605155 coding upstream 130482 36109289 ~ 36113122 (+)
iglon5 iglon5 coding upstream 174192 35928900 ~ 36069412 (+)
LOC118936744 LOC106605183 coding downstream 27059 36275741 ~ 36278586 (+)
LOC110488849 LOC106605147 coding downstream 106201 36354883 ~ 36405310 (+)
LOC110488866 LOC106582899 coding downstream 172069 36420751 ~ 36656060 (+)
LOC110488878 LOC106561205 coding downstream 463402 36712084 ~ 36715233 (+)
LOC110488885 LOC106605145 coding downstream 472466 36721148 ~ 36732138 (+)
G137250 NA non-coding upstream 28774 36214519 ~ 36214830 (+)
G137249 NA non-coding upstream 29788 36213478 ~ 36213816 (+)
G137223 LOC107707628 non-coding upstream 33296 36210012 ~ 36210308 (+)
G137245 LOC106605149 non-coding upstream 35873 36202488 ~ 36207731 (+)
G137257 NA non-coding downstream 2660 36251342 ~ 36252734 (+)
G137265 NA non-coding downstream 6578 36255260 ~ 36255446 (+)
G137266 NA non-coding downstream 8210 36256892 ~ 36257096 (+)
G137274 NA non-coding downstream 16946 36265628 ~ 36265874 (+)
G137275 NA non-coding downstream 17886 36266568 ~ 36266828 (+)
G137058 LOC106605156 other upstream 143327 36099611 ~ 36100277 (+)
G136994 NA other upstream 205863 35982832 ~ 36037741 (+)
LOC100653444 LOC106584591 other upstream 387204 35855149 ~ 35865269 (+)
LOC110488639 LOC106605005 other upstream 456134 35785691 ~ 35788114 (+)
LOC110488391 LOC106582385 other upstream 1059608 35180650 ~ 35184002 (+)
G139004 NA other downstream 1528379 37777061 ~ 37824010 (+)
G139089 LOC106605123 other downstream 1671053 37919735 ~ 37940714 (+)
G139101 NA other downstream 1695060 37943742 ~ 37944012 (+)
G139179 NA other downstream 1802677 38051359 ~ 38051744 (+)

Expression


Co-expression Network