Gene
RNA
| Item | Value |
|---|---|
| gene id | G139000 |
| gene name | LOC105030512 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 37697059 ~ 37697353 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| Transposable element Tc1 transposase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU159840 | True | 295 | lncRNA | 0.39 | 1 | 37697059 | 37697353 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118939571 | NA | coding | downstream | 220297 | 37463985 ~ 37476762 (-) |
| LOC110501508 | LOC106605132 | coding | downstream | 233220 | 37442359 ~ 37463839 (-) |
| LOC110488968 | LOC106605134 | coding | downstream | 359452 | 37332647 ~ 37337607 (-) |
| LOC110533765 | NA | coding | downstream | 424084 | 37264176 ~ 37272975 (-) |
| LOC110488943 | LOC106582967 | coding | downstream | 771177 | 36922102 ~ 36925882 (-) |
| LOC110489008 | LOC106604987 | coding | upstream | 80051 | 37777404 ~ 37782182 (-) |
| LOC118939581 | LOC106604987 | coding | upstream | 93886 | 37791239 ~ 37796388 (-) |
| LOC118939584 | c3-1 | coding | upstream | 107656 | 37805009 ~ 37806792 (-) |
| LOC110489018 | LOC106597357 | coding | upstream | 109406 | 37806759 ~ 37810055 (-) |
| LOC110489027 | c3-1 | coding | upstream | 120761 | 37818114 ~ 37823518 (-) |
| G138979 | NA | non-coding | downstream | 14688 | 37682067 ~ 37682371 (-) |
| G138978 | NA | non-coding | downstream | 15377 | 37681368 ~ 37681682 (-) |
| G138968 | NA | non-coding | downstream | 29161 | 37667638 ~ 37667898 (-) |
| G138964 | NA | non-coding | downstream | 31722 | 37665070 ~ 37665337 (-) |
| G138940 | LOC106583027 | non-coding | downstream | 61989 | 37634377 ~ 37635070 (-) |
| G139243 | NA | non-coding | upstream | 65195 | 37762548 ~ 37763713 (-) |
| G139256 | NA | non-coding | upstream | 76329 | 37773682 ~ 37774184 (-) |
| G139310 | NA | non-coding | upstream | 205241 | 37902594 ~ 37906515 (-) |
| G139309 | LOC106605124 | non-coding | upstream | 209597 | 37906950 ~ 37911825 (-) |
| G139333 | NA | non-coding | upstream | 250406 | 37947759 ~ 37948117 (-) |
| pnrc2 | LOC106605140 | other | downstream | 847714 | 36844929 ~ 36849373 (-) |
| G138080 | NA | other | downstream | 868662 | 36825792 ~ 36828397 (-) |
| G137839 | LOC106605146 | other | downstream | 1058054 | 36634193 ~ 36639005 (-) |
| G137479 | NA | other | downstream | 1326731 | 36370004 ~ 36370328 (-) |
| G139231 | NA | other | upstream | 50088 | 37747441 ~ 37752958 (-) |
| LOC110489105 | LOC106605178 | other | upstream | 349349 | 38046700 ~ 38048666 (-) |
| G140479 | NA | other | upstream | 1130556 | 38827909 ~ 38828195 (-) |
| G140879 | NA | other | upstream | 1366509 | 39063862 ~ 39064418 (-) |
| G141363 | LOC106605077 | other | upstream | 2066580 | 39763933 ~ 39765473 (-) |
