G139038 (LOC106586992)


Basic Information

Item Value
gene id G139038
gene name LOC106586992
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 37772990 ~ 37773504 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU159908
aGCAAAACCATTCAAGGTGATGAGGATGCAATGTGAAGACTTCAGGCACCTCCCAGATTCTGTCCTCAAGCGACCAGCTGGACTACAGATCACCTCAGTGAGGTGGTTAAAAGTCACAGTTGAGGATCCTTGGAATCTGTACGCCAAACAGAGCCAGTCTATTTGAGGGATGGAAGTCGTGGCTGATCTCCAAACCAAAAGGAGGAGCTACACCTCAACCTCCCTATTTTGCAAGCCACTACCCTAGAGCACATGAGAGTCCTCTGCCCATCAAAAAAAACAAGTACCAAGATCTGATGACCATGCTCAACGACTTGCCAGCTGCTGCACGCTCTTTTTATGAATCACTGCAGAGTGAATAATTTGTTGTTAAACCAAGC

Function

NR:

description
uncharacterized protein LOC110524522

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU159908 True 380 lncRNA 0.45 2 37772990 37773504

Neighbor

gene id symbol gene type direction distance location
LOC110501519 LOC106605129 coding upstream 9275 37699215 ~ 37763715 (+)
LOC110489000 LOC106605130 coding upstream 108697 37628152 ~ 37664293 (+)
LOC110488991 LOC106605131 coding upstream 151115 37607093 ~ 37621875 (+)
gnl2 nog2 coding upstream 169696 37572404 ~ 37603294 (+)
LOC110488976 LOC106605133 coding upstream 376328 37347656 ~ 37396662 (+)
LOC110489035 LOC106605126 coding downstream 89697 37863201 ~ 37890510 (+)
sh3d21 LOC106605124 coding downstream 118447 37891951 ~ 37911330 (+)
LOC110489135 LOC106605117 coding downstream 944788 38718292 ~ 38734398 (+)
LOC110489149 LOC106605176 coding downstream 983729 38757233 ~ 38786447 (+)
LOC110489163 LOC106605115 coding downstream 1016032 38789536 ~ 38823441 (+)
G138991 NA non-coding upstream 79809 37692982 ~ 37693181 (+)
G138805 NA non-coding upstream 182433 37535056 ~ 37590557 (+)
G138640 NA non-coding upstream 240877 37531419 ~ 37532113 (+)
G138631 NA non-coding upstream 254136 37518494 ~ 37518854 (+)
G138630 NA non-coding upstream 260245 37512539 ~ 37512745 (+)
G139040 NA non-coding downstream 3087 37776591 ~ 37776949 (+)
G139102 NA non-coding downstream 171398 37944902 ~ 37945164 (+)
G139103 NA non-coding downstream 171840 37945344 ~ 37945605 (+)
G139139 LOC106605122 non-coding downstream 229562 38003066 ~ 38007585 (+)
G139167 NA non-coding downstream 262971 38036475 ~ 38036812 (+)
LOC110488849 LOC106605147 other upstream 1371019 36354883 ~ 36405310 (+)
G137058 LOC106605156 other upstream 1672713 36099611 ~ 36100277 (+)
G136994 NA other upstream 1735249 35982832 ~ 36037741 (+)
LOC100653444 LOC106584591 other upstream 1916590 35855149 ~ 35865269 (+)
LOC110488639 LOC106605005 other upstream 1985520 35785691 ~ 35788114 (+)
G139004 NA other downstream 3557 37777061 ~ 37824010 (+)
G139089 LOC106605123 other downstream 146231 37919735 ~ 37940714 (+)
G139101 NA other downstream 170238 37943742 ~ 37944012 (+)
G139179 NA other downstream 277855 38051359 ~ 38051744 (+)
LOC110489834 eny2 other downstream 3765791 41539240 ~ 41541654 (+)

Expression


Co-expression Network