G139309 (LOC106605124)


Basic Information

Item Value
gene id G139309
gene name LOC106605124
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 37906950 ~ 37911825 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU160228
AAACCCTATttatttactttagtttatttcatGTTACACTAGCAGTTTTAGCCCGAGAGGGAATATGCAGTCCATCACACATATTCAATGCCATTTTTAAAAATAGTTTGTTCCCATGGCAGTTTCAGAAGCCCACTCTCTCTAATGTGTTCCAGATGCTCTCCAGATGTGCTTTCCAGCTCACAGACTTCCCGGGCCGTGCCAGAAGCATGTCGCCAATGCCGAGACGGGGGAAACAGATCTATAGGGCTCACTCAAGAGAAGCCAAAGGCCTAAAATGCAGCTCCAGAACCATCTTCAGCTCCCTGACCTCAGCGTGTAGGCTGTCCAGACAAGGCTTCTCCTCCTGGGTTGCCCTGGCCTCCACTACAGCCTTGGGAAGTGCTAGCCTGGAAGGTACTGGATTCTTGGTAGGATGCTCAGGCTTGGATGGTGGTGAATGACTTTCTGAAATCTGTGGACTGGTGACGAGGGCTGATGGGGGTCGTCTCTGTGGGGGTTTGGCTCTGTTGGCTGTGGGGTGACTCAGTTTCTCAGGGGACACCTCCACTCCGTCAAACTGGTCCGAGTTGCTGTCCTCTGAACATTTTGGTGAAAGAGGAGGGAGATCGCCATTGGCTCTAATGGGGGAAAATAGGCATTTTTTTCAGAGAAAGTAAACTTTCATTTTTTCAGGCCTACACTGGTTGATTCATAAGGTTAACTAGACCCAAAAATCTATGATGTAAAGAAAGAAAACTGAAACATATGCTTCATTTTCTACAGTTGAGATTttcttttgatgaaaattgttgTGGTTTAGTGTGGAAAAAGTGGCATCCTGTTTCCTGTTGCATGTTTTAAGAGGCAGGTGGTGATGTACTGCATATTGAAACCTCAGTGAGTTAATGTTTAGCCAAGCATTAAGACTTCCCCTTTTAACGTCCACACCCTCACTAGAACAAAAAGACGCAATAGCTTTTAATAAAATATACAAACTTGTTTGACCTGATATAATCCAAAGTGAATTTGACAAATAAGCAAAATGCTTTTAGCCAAGGCCACACTATCATTGCATTGCCTCCAACATGTGACAGTTACTTGGAAAGAACAGTCCGAATGGCTTTT

Function

NR:

description
CD2-associated protein-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU160228 True 1107 lncRNA 0.44 3 37906950 37911825

Neighbor

gene id symbol gene type direction distance location
LOC110489027 c3-1 coding downstream 83432 37818114 ~ 37823518 (-)
LOC110489018 LOC106597357 coding downstream 96895 37806759 ~ 37810055 (-)
LOC118939584 c3-1 coding downstream 100158 37805009 ~ 37806792 (-)
LOC118939581 LOC106604987 coding downstream 110562 37791239 ~ 37796388 (-)
LOC110489008 LOC106604987 coding downstream 124768 37777404 ~ 37782182 (-)
LOC110489074 LOC106605123 coding upstream 8864 37920689 ~ 38000324 (-)
LOC110489088 LOC106583156 coding upstream 91234 38003059 ~ 38029406 (-)
LOC110501529 NA coding upstream 124141 38035966 ~ 38046439 (-)
LOC110489105 LOC106605178 coding upstream 134875 38046700 ~ 38048666 (-)
LOC110489095 LOC106605120 coding upstream 137072 38048897 ~ 38053364 (-)
G139310 NA non-coding downstream 435 37902594 ~ 37906515 (-)
G139256 NA non-coding downstream 132766 37773682 ~ 37774184 (-)
G139243 NA non-coding downstream 143237 37762548 ~ 37763713 (-)
G139000 LOC105030512 non-coding downstream 209597 37697059 ~ 37697353 (-)
G138979 NA non-coding downstream 224579 37682067 ~ 37682371 (-)
G139333 NA non-coding upstream 35934 37947759 ~ 37948117 (-)
G139385 NA non-coding upstream 141949 38053774 ~ 38054030 (-)
G139386 NA non-coding upstream 143082 38054907 ~ 38055140 (-)
G139231 NA other downstream 153992 37747441 ~ 37752958 (-)
LOC110501508 LOC106605132 other downstream 443192 37442359 ~ 37463839 (-)
pnrc2 LOC106605140 other downstream 1057605 36844929 ~ 36849373 (-)
G138080 NA other downstream 1078553 36825792 ~ 36828397 (-)
G137839 LOC106605146 other downstream 1267945 36634193 ~ 36639005 (-)
G140479 NA other upstream 916084 38827909 ~ 38828195 (-)
G140879 NA other upstream 1152037 39063862 ~ 39064418 (-)
G141363 LOC106605077 other upstream 1852108 39763933 ~ 39765473 (-)
LOC110489653 LOC106605072 other upstream 2312797 40224622 ~ 40298333 (-)

Expression


Co-expression Network