G139139 (LOC106605122)


Basic Information

Item Value
gene id G139139
gene name LOC106605122
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 38003066 ~ 38007585 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU160029
TATCAAAGTTTATTGCTGACATGCATGTAGAGATTTGATGAAGTACAAAAATATGTCTTTTATACAAACTTTTTTTTCATCTCTGTACAATTAGCCAGGTTTTTGTATTAGGTGCTCATATCCAACAAAGCAGCTTACAACAAATCCTGCTGGTTTTCAACCATTTTTTACCACCACATCATACACCATCTATTTTCCAGTTGTAATATTCAGCAAATCAAATACATcgttaaactgacagatatttcCAATATTTTTGAATTATAGTAAAAATGAAAACTTAAGTTGAATGTTCATTAAATGAAAAATCAGTTGTATTATGAAAAACATTAGGTTTTTCTGTAAGACTCAAATTTCCAATTCTCCCTGGTTGGTTGATTTCAGGCAATTATAATTGTGGGACCACCttgaaagtaaaaaataaaaatcatgcAAAATCACATTTTACAAAGAGCTCAAGATCATGCTTCGTATGGTGCTTTCAGTCCACAGAAAATCTATGAAGGGGACAACTTTCATAGACAACTGGGACAAGTCCAACAGCCAAATGTGAACACTATCTTGATAATGCTTCAGATAATACATTACTATCAAGGGTCTTACCTAATAAAcctgcatatttatatccaataGTGGGTTATGGTCACCCTCAAGTAAGACGGGATCACAAATTTGCCTTCAACTTCAGCAAGGGCTGTGGAGTTCACAAAATATCCTTTTCTCATGAACTACTGACACACTATCAACTACAATACTGCTTTATACCCAGAAATTCACATTGAGGTGGGAAAAAAGCTAACATCTCATTACATGTATCTATTTATTTTTCTCAAAAGGTGGTGGCTAGCATTGCATCTAATGCATGTCTATATATAATTTGTGTTAAAGCAGGGCTGTTCAAGAGTGTGCAATGTTACAAAACATTCAGATGAAGATATGATTTCCTGTCATGTTGAATTTGGAATCATGTCAGTTCTATTCATCACATTCCTATCTGCAACATATCACCTTACTGAATGTACCCCTGATCAGAGCTGGTATCGTTCCACTAGATGGAAGCTCTACTGGTGTTGTCGCTGTAATGATGGTATTATATTTACATACTGACCAAAAGTCTGGTATGGGGCGATAAACAgttggcctggtcccagatctgtttgtgctggtcATTGTCAAGGAAACAGGAGTTGGCAAGTCTGCACAAACAGAACTGGGATCCGGGTAATAAACAGATCACTACCATAAATCATCATAATGCACGAttatttgtgtaaaaaatagaaCTATGCAGAGTCAGTCTCATTATTAGTGTAGCTTAAATCGACCACAAGTGTGTGGCaatggtaaaataaaatataaaaagagATCTTTAATGAACATGGCTGATGGAGAAAAAACTGCAATGGCAGCTCAAGTTTGAATGTTTGGAGAAACAAATGAAACCAGAACACTTCTTGCTTAAAGCTAAAAATGGAAAATGGATTTGATGCCTGAAAATGGACAGTGAATAAATAACAAAATTAACATACATGAAATTGAGGAAAAAGACAATTTACAATGAAATAGGACAAAACTGACTCAAGTTTCTACTCGTGATCAATTTGGATATAAATAGGGTGAAGGTCTAAGCAATGCAAATACTCATAAAGATGGGCAAGCTTATGTGAACAGATGACTAATATTGTTCACGAGTTAGTAGCTTAGCAACATTGGCAGCTATTTTTTTACAAACTTTGCTAACAaatgacaacattgccatctGTCTAAAGTAAATTTGCCGACATAATGGCAAACATTTTTCGTACTAAATATCTTcctactttagcaatgtcatcgtATTTCAAGGACACTAGTGTACTTTAGACGAAACAGCCGTTAGCGTCTGTGCAGAATGATTGGATTGATCACGACGTTTGTCACCACTACGGCACCGCCAGCAGAGGGAGGCTTGAGAATGTGCACAACGCGACAGACAACCTCACTGTTGAGTTTCTCTATGAAATATTACACTATTCAATTATCACTATCAACACCATAGTAAGTCTTTCATGCTCAGCTACTACATTATAACTTACAACAGCTAAAAGGGAGAGCTACTATGATCATCACGGTTTCGTTTGATTTTAAACTTGGCTACGCACTAGAGCATTCATGACTAAGACCGGGGCAAAATGAGGGATGCCCATCTTTCATAGCGGACACATGCAGTCCAGACAGTCTTAGAAAAGCCTGTATGTTCTCAGTGTGTGCGAGCAACTGAGGCAGGCAAGATAAACAGATTTGGAAGGATGGTTAGTTTAAGGATCTGCACTGACTCACCGGGCTTCAATAACGTGGCTCTAGTCGGCACCTACCACTGAAAAGGCTCTGGCTTAGTCTAATACACCCCTGGCCCGAATCACACTTATCTACACAATGACAATCACTGGCATTACCATTCATTCAAATTCATGCCCAATACCTGTCTCACAATAATGATGTCACAGGATAAACCGGGAAGTTGAATACCTGGAAGTTGTTCAGTGGTGAACGTGGGGGAGGTATCATTTCCTTGGCTAACAATCAGTTAAGACGCGCCATGATTTCACCACCCCCCAAAAATGATAGTGTCCACGTCGTGATTATTAACCAAAGATGCCAATTAGAAGAGCATTAACGGAAGAGGATCAACATTAAACATCTAATAAACGTCGCCCCATCCAGCTCTTCCAGGTACTTGACACctaaatgcaaaaaaaaatgggGGTGAGAGCAAAAGCAAGaaaacaatatcatctgctagaGTTAAAGACAGAAGTAGTCGATTTGGCCACCCTTTGATAGTTAGCATTTTCAATGTAGAATAGATAGAAGGGTAAAATGCTACTTATTAGTCATTAGGAAAAAAGCTTATTCATATCCCACATTCCAAACCATTATGCACCAAAACATAGTAATGCTTTCTGTCTACGGTGACAACACTACCCCGACAATTCCTTGTTTTCCGAGAATGGTGGACATGGTTTAAAatccacacaaaaaaataaaagtaaagatTGAGAGAGGTAGATTTGAAGTCTTCAGCTTAGAGACGGGACTAGTCCAGATAATTTTGGTTATGAGGAAACTAAAGAGAGTGAATTACATCCATGATCAAGTGATCTTAGTTTGGAGAGTTGAGGAGAGGGAGGTTAGAGGAAGGTTGCTACATGGTCCTTCTGGCCCTGTATTGCTCAGGGTTTTCAAGAATAAATGGGGGTAGGTAGGAGGGCGATGACCAGGTCTCAGCAGAGAGAAAcaaatggtgggggggggggggttccatgtCCAAACACACATGCGTGTCTGGTATCCCCCTGGCCTGTACGAGTCCATATGTGCccatagctggctggctggctgagtccATATGTGCCCAtaggtggctggctggctgagtccATATGTGCccatagctgGCTGGCTGAGTCCATATGTGCccatagctggctggctggctgagtccATATGTGCCCATAGCTGGCTGAGTCCATATGTGCCCATAGCTGGCTGGCTGAGTCCATATGTGCCcatagctggctggctgggtccATATGTGCccatagctggctggctggctgagtccATATGTGCccatagctggctggctggctgggtccATATGTGCccatagctggctggctggctgggtccATATGTGCCcatagctggctggctgggtccATATGTGCCCATAACTGGCTGGCTGAGTCCATATGTGCCCATAGCTGGCTGGCTGAGTCCATATGTGCCCATAGCTGGCTGGCTGAGTCCATATGTGCCCATAGCTGGCTGGCTGAGTCCATATGTGCCCATAGCTGGCTGGCTGAGTCCATATGTGCCCATAGCTGGCTGGCTGAGTCCATATGTGCCCATAGCTGGCTGGCTGAGTCCATATGTGCCCATAGCTGGCTGGCTGAGTCCATATGTGCCcatagctagctggctggctgaggGTACAGTGGGAGCCTTTGGTTGAGATCTTCAGATTCTCCAGCCATGTCATTCCTGTGCACACCACCGACACCCAGACTTGAAGTGTGAAACCCATCTGCTCCCACTCCACCTACCTAACTCTCCACAGCTAGGGATCCCTCTACCCAAGGGAGGGTCGGGCTAAGCTCCCATAGATACTAGTTTCAGGGTACCTTCCCGACCCAACCCTTGTCCCCCACCCCACTTGTCCCCCAGAGGGCAAGGTGATGGGTGAAGGGGCTACTTCCGGAGGAAGCGCTGGGCCAGGATGGCTGCGTCCAGAGGGCTGACGGGTGTGGCATCGTGGCCCAGGCGCCGCACGGGCGGGATGGAGCTGAACTGGCGCTTGGCGAGGAAACTGGCCTTGGCCTCGTGAATAGTGTTCTTCTCCTCGGCCAGCAGCAGCTGCTGGCGCATGTAGTTCTCAAACTCGTACTGTGACGACTCCTCCGTCATTTTCACC

Function

NR:

description
serine/threonine-protein kinase 40-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU160029 True 4456 lncRNA 0.44 2 38003066 38007585

Neighbor

gene id symbol gene type direction distance location
sh3d21 LOC106605124 coding upstream 91736 37891951 ~ 37911330 (+)
LOC110489035 LOC106605126 coding upstream 112556 37863201 ~ 37890510 (+)
LOC110501519 LOC106605129 coding upstream 239351 37699215 ~ 37763715 (+)
LOC110489000 LOC106605130 coding upstream 338773 37628152 ~ 37664293 (+)
LOC110488991 LOC106605131 coding upstream 381191 37607093 ~ 37621875 (+)
LOC110489135 LOC106605117 coding downstream 710707 38718292 ~ 38734398 (+)
LOC110489149 LOC106605176 coding downstream 749648 38757233 ~ 38786447 (+)
LOC110489163 LOC106605115 coding downstream 781951 38789536 ~ 38823441 (+)
LOC110489178 LOC106605114 coding downstream 816000 38823585 ~ 38847695 (+)
LOC110533769 LOC106583263 coding downstream 847597 38855182 ~ 38857226 (+)
G139103 NA non-coding upstream 57461 37945344 ~ 37945605 (+)
G139102 NA non-coding upstream 57902 37944902 ~ 37945164 (+)
G139040 NA non-coding upstream 226117 37776591 ~ 37776949 (+)
G139038 LOC106586992 non-coding upstream 229562 37772990 ~ 37773504 (+)
G138991 NA non-coding upstream 309885 37692982 ~ 37693181 (+)
G139167 NA non-coding downstream 28890 38036475 ~ 38036812 (+)
G139177 NA non-coding downstream 41353 38048938 ~ 38049391 (+)
G139180 NA non-coding downstream 44764 38052349 ~ 38052700 (+)
G139181 NA non-coding downstream 45557 38053142 ~ 38053430 (+)
G139191 NA non-coding downstream 56184 38063769 ~ 38064016 (+)
G139101 NA other upstream 59054 37943742 ~ 37944012 (+)
G139089 LOC106605123 other upstream 62352 37919735 ~ 37940714 (+)
G139004 NA other upstream 179056 37777061 ~ 37824010 (+)
LOC110488849 LOC106605147 other upstream 1601095 36354883 ~ 36405310 (+)
G137058 LOC106605156 other upstream 1902789 36099611 ~ 36100277 (+)
G139179 NA other downstream 43774 38051359 ~ 38051744 (+)
LOC110489834 eny2 other downstream 3531710 41539240 ~ 41541654 (+)
G143938 LOC106605049 other downstream 3960789 41968374 ~ 41969317 (+)
G144661 NA other downstream 4502745 42510330 ~ 42566030 (+)
G146054 LOC100136012 other downstream 5723287 43730872 ~ 43731218 (+)

Expression


Co-expression Network