G139318 (csf3r)


Basic Information

Item Value
gene id G139318
gene name csf3r
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 38065038 ~ 38066918 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU160241
CAGAGTACCACATCCAGATACGGGTCGGTTATCACCAGAGTCCATGGAGCGAATGGAGTAACAGCAATACTGCAGTCACGCTTGAGAGGGCTCCCACCGGACCACGCGACTCTTGGATGACGGTATCTAGGGAACAGAGGCAAAAACATCTCGGGGTATACTTGTTTTGGAAGttctggcAGCAGTCTCTGACGTCaatgtccttcctcatgatgagAGATCACTACTGGTCCAGTGGACAAGCATACATTCATCCAGTGTCACAGGCTATGTGGTGGAGTGGAGGCCATTGTGGAAAATGGACCCTTCCCTCATCTTGTTTGACCACATTGACAGGAATCAATCCAGCACTCTAATATTAGAGAGCATCGAGCCATACAATCCCTATGGGATCTCTGTCTATCCTAGGTATAAGGACGGAATTGGCCTTCCTCAAACCGTCGAGGGTAAACACTAACCCTTACACCTTGGACTTTGTACGATCTTTACAATATCAAAAGAGGTGTTGCAGGCTTCCTTTGAGTCAATGAGGTGCGAATCAGCTGCAAAACATACTGATGAAAGGTGGCACAATGCTTCCCTCTACTGGAGACATAGAGCAAATTACACCTCTGCATTCTGCTTCCA

Function

symbol description
csf3r Enables molecular sequestering activity. Acts upstream of or within hemopoiesis and positive regulation of hematopoietic progenitor cell differentiation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in external side of plasma membrane. Is expressed in several structures, including heart; hematopoietic system; immune system; myeloid cell; and pleuroperitoneal region. Used to study neutropenia and severe congenital neutropenia. Human ortholog(s) of this gene implicated in hematologic cancer (multiple) and severe congenital neutropenia (multiple). Orthologous to human CSF3R (colony stimulating factor 3 receptor).

NR:

description
Granulocyte colony-stimulating factor receptor precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU160241 True 627 lncRNA 0.49 4 38065038 38066918

Neighbor

gene id symbol gene type direction distance location
LOC110489095 LOC106605120 coding downstream 11674 38048897 ~ 38053364 (-)
LOC110489105 LOC106605178 coding downstream 16632 38046700 ~ 38048666 (-)
LOC110501529 NA coding downstream 18599 38035966 ~ 38046439 (-)
LOC110489088 LOC106583156 coding downstream 35632 38003059 ~ 38029406 (-)
LOC110489074 LOC106605123 coding downstream 64714 37920689 ~ 38000324 (-)
LOC110489123 LOC106605177 coding upstream 19247 38086165 ~ 38087398 (-)
LOC110489131 LOC106605119 coding upstream 312274 38379192 ~ 38494341 (-)
LOC110489143 LOC106605116 coding upstream 673809 38738678 ~ 38779271 (-)
LOC110489186 NA coding upstream 785315 38852233 ~ 38854258 (-)
LOC110489192 LOC106605112 coding upstream 791588 38858506 ~ 38892046 (-)
G139386 NA non-coding downstream 9898 38054907 ~ 38055140 (-)
G139385 NA non-coding downstream 11008 38053774 ~ 38054030 (-)
G139333 NA non-coding downstream 116921 37947759 ~ 37948117 (-)
G139393 NA non-coding upstream 819 38067737 ~ 38067937 (-)
G139437 NA non-coding upstream 29966 38096884 ~ 38100499 (-)
G139527 NA non-coding upstream 87030 38153948 ~ 38171922 (-)
G139547 NA non-coding upstream 110698 38177616 ~ 38177842 (-)
G139550 NA non-coding upstream 112791 38179709 ~ 38179917 (-)
G139231 NA other downstream 312080 37747441 ~ 37752958 (-)
LOC110501508 LOC106605132 other downstream 601280 37442359 ~ 37463839 (-)
pnrc2 LOC106605140 other downstream 1215693 36844929 ~ 36849373 (-)
G138080 NA other downstream 1236641 36825792 ~ 36828397 (-)
G140479 NA other upstream 760991 38827909 ~ 38828195 (-)
G140879 NA other upstream 996944 39063862 ~ 39064418 (-)
G141363 LOC106605077 other upstream 1697015 39763933 ~ 39765473 (-)
LOC110489653 LOC106605072 other upstream 2157704 40224622 ~ 40298333 (-)
G142918 NA other upstream 2796296 40863214 ~ 40863721 (-)

Expression


Co-expression Network