G139437


Basic Information

Item Value
gene id G139437
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 38096884 ~ 38100499 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU160363
atccgctattgaacgcagtttatcccaacttaaattttatcgattatgtacgttaaaaatacctaaagttgtattaggaaagttgtttgaaatgtttggacaaagattacaggtaatttattcaatattttgtagtcatgttgcgcgagttggaaccggtgtttttctggatcaaacgatATAACGatggaattaattgaacaaaaggaccatgtgtgatgtttatgggacattttggagtgccaacagaagaagttctccaaaggtaaggcatgaattatattggtatttctgagttttgtgtcgtgcctggtgggatgaaatatgattgtctgtgtttgtttgatggggtgctgtcctcagataatcgcatggtttgctttcgccgtaaagcctttttgaaatctgacaacgtggctggattaacaagaagttaagctttattttgacatattgcatgtgtattttcaagaatgttaaatatttacaatTCTCTAGTTTGAATTTggagccctgcactttcactggatgttggtctgATGGGACGGTAGAGTCCCATCTAGCCTAGAGAGGTTTTTAAGCATGATTATCAGAATATGAGGAGTAGAGATTGAGAGTAAGAAATAGGATTAGAAATTGGAAGGAGGTGGTTGAATGAATCTGTATTCACTTTCTCTAACTGTCTGTCATACTATGTTCCCAGACATCACGGCTGGTGAATCCACACCCTTCCTCCAACCCCCAAAAGCAGCACCCCAAGACATAGCCGTCACAATCCTACCAGACAACGTGGTAGGGTGACTTCAAACCTTGAGCTGTAAAGCGGGGATGCAAACTAGTCACAATTTGAATACAAAAGCAGGTGCATTAACATTGTAACAATACAGCAAGCAGAAAAATAATGTATGCATGTGCAGTTTTGCTTAATTTAACGTAAATGTTTTAATGCATATTGTAGTACAATGATAATTTGTTTTATACGTGTTTTAACTTCTAGAGCGCCATATAGGACTATGCAAAAAATATTCACAAAACTACTAAATCTATCTATAGGAGTACAGCAAGCAAACAACTTCAGTCATGGCAGAAAGGACTACGAGAATGGTTTTATAATTCAAATACATTTACTTACTTAAAGTGGTGGTTCATCGAAAATACTTTTAACCTCATTACAACATTTGCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU160363 True 1183 lncRNA 0.37 2 38096884 38100499

Neighbor

gene id symbol gene type direction distance location
LOC110489123 LOC106605177 coding downstream 9486 38086165 ~ 38087398 (-)
LOC110489095 LOC106605120 coding downstream 43520 38048897 ~ 38053364 (-)
LOC110489105 LOC106605178 coding downstream 48478 38046700 ~ 38048666 (-)
LOC110501529 NA coding downstream 50445 38035966 ~ 38046439 (-)
LOC110489088 LOC106583156 coding downstream 67478 38003059 ~ 38029406 (-)
LOC110489131 LOC106605119 coding upstream 278693 38379192 ~ 38494341 (-)
LOC110489143 LOC106605116 coding upstream 640228 38738678 ~ 38779271 (-)
LOC110489186 NA coding upstream 751734 38852233 ~ 38854258 (-)
LOC110489192 LOC106605112 coding upstream 758007 38858506 ~ 38892046 (-)
LOC110489249 LOC106605107 coding upstream 852325 38952824 ~ 38963780 (-)
G139393 NA non-coding downstream 28947 38067737 ~ 38067937 (-)
G139318 csf3r non-coding downstream 29966 38065038 ~ 38066918 (-)
G139386 NA non-coding downstream 41744 38054907 ~ 38055140 (-)
G139385 NA non-coding downstream 42854 38053774 ~ 38054030 (-)
G139527 NA non-coding upstream 53449 38153948 ~ 38171922 (-)
G139547 NA non-coding upstream 77117 38177616 ~ 38177842 (-)
G139550 NA non-coding upstream 79210 38179709 ~ 38179917 (-)
G139656 NA non-coding upstream 150760 38251259 ~ 38251717 (-)
G139686 NA non-coding upstream 170944 38271443 ~ 38271826 (-)
G139231 NA other downstream 343926 37747441 ~ 37752958 (-)
LOC110501508 LOC106605132 other downstream 633126 37442359 ~ 37463839 (-)
pnrc2 LOC106605140 other downstream 1247539 36844929 ~ 36849373 (-)
G138080 NA other downstream 1268487 36825792 ~ 36828397 (-)
G140479 NA other upstream 727410 38827909 ~ 38828195 (-)
G140879 NA other upstream 963363 39063862 ~ 39064418 (-)
G141363 LOC106605077 other upstream 1663434 39763933 ~ 39765473 (-)
LOC110489653 LOC106605072 other upstream 2124123 40224622 ~ 40298333 (-)
G142918 NA other upstream 2762715 40863214 ~ 40863721 (-)

Expression


Co-expression Network