G139681


Basic Information

Item Value
gene id G139681
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 38268745 ~ 38269044 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU160628
tgcctaagtcacgttcatgcagatgagcagggaccctgggcatctttctttcggtatttttcagagtcagtagaaagacctctttagtgtcttaagttttcataactgtgaccttaattgcataccatctgtaagctgttagtgtcgtAATGACCCTTCCACAGGTGGATgttcatgggaaacagtgtttaaaccctttaaaaggaagatctgtgaagtgaattggatttttatgaattatctttgaaagacagggtcctgaaaaagggatgtttatttttttgctgagtttatatacac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU160628 True 300 lncRNA 0.44 1 38268745 38269044

Neighbor

gene id symbol gene type direction distance location
sh3d21 LOC106605124 coding upstream 357415 37891951 ~ 37911330 (+)
LOC110489035 LOC106605126 coding upstream 378235 37863201 ~ 37890510 (+)
LOC110501519 LOC106605129 coding upstream 505030 37699215 ~ 37763715 (+)
LOC110489000 LOC106605130 coding upstream 604452 37628152 ~ 37664293 (+)
LOC110488991 LOC106605131 coding upstream 646870 37607093 ~ 37621875 (+)
LOC110489135 LOC106605117 coding downstream 449248 38718292 ~ 38734398 (+)
LOC110489149 LOC106605176 coding downstream 488189 38757233 ~ 38786447 (+)
LOC110489163 LOC106605115 coding downstream 520492 38789536 ~ 38823441 (+)
LOC110489178 LOC106605114 coding downstream 554541 38823585 ~ 38847695 (+)
LOC110533769 LOC106583263 coding downstream 586138 38855182 ~ 38857226 (+)
G139679 NA non-coding upstream 335 38267994 ~ 38268410 (+)
G139598 NA non-coding upstream 55209 38213240 ~ 38213536 (+)
G139452 NA non-coding upstream 155517 38112988 ~ 38113228 (+)
G139191 NA non-coding upstream 204729 38063769 ~ 38064016 (+)
G139181 NA non-coding upstream 215315 38053142 ~ 38053430 (+)
G139685 NA non-coding downstream 2479 38271523 ~ 38271735 (+)
G139738 NA non-coding downstream 44430 38313474 ~ 38313749 (+)
G139741 NA non-coding downstream 46767 38315811 ~ 38316028 (+)
G139750 NA non-coding downstream 56918 38325962 ~ 38326312 (+)
G139751 NA non-coding downstream 57345 38326389 ~ 38326760 (+)
G139179 NA other upstream 217001 38051359 ~ 38051744 (+)
G139101 NA other upstream 324733 37943742 ~ 37944012 (+)
G139089 LOC106605123 other upstream 328031 37919735 ~ 37940714 (+)
G139004 NA other upstream 444735 37777061 ~ 37824010 (+)
LOC110488849 LOC106605147 other upstream 1866774 36354883 ~ 36405310 (+)
LOC110489834 eny2 other downstream 3270251 41539240 ~ 41541654 (+)
G143938 LOC106605049 other downstream 3699330 41968374 ~ 41969317 (+)
G144661 NA other downstream 4241286 42510330 ~ 42566030 (+)
G146054 LOC100136012 other downstream 5461828 43730872 ~ 43731218 (+)
G146091 NA other downstream 5499663 43768707 ~ 43769162 (+)

Expression


Co-expression Network