G139826 (LOC106605119)


Basic Information

Item Value
gene id G139826
gene name LOC106605119
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 38379248 ~ 38383209 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU160778
TGTACAATTGAATTATTCACAGTGTTAAAAAGAAAATAACGCAATAGCCtctctatgattttgtatttcccCATGTTTTACTTGGTTATTCTAATAATGGTATTCTCTTAACACATACAGTTATTAGGTAAACAGAAAATGTTCCAAAACGTTACAAAAAACTATATTCATAGAAATTCTGCATGTCCACAAAGAAAACCCCGGTCGGCACCAACATATCAATCCTATTGTTTGAGAGGTTTCTTGTCAAATGATAGAAGTAGACAATTCAGCTCAACTCAaaacaaaacataaataaataccTAGCGCTGTGACTGTTTTGATTGCTTAATAAAGTGCAACTCATTCTAACTCATAGCAAATACTGCAcatgttatttttttctttatttttatctTGGATTTCATAAAATTTTGAAAAATAACTGGATTCACATTTTGCTTTAAAAAAGACAGTATGCTTCATAATTGGGATTGATTGAATTAACTGAACTCAAATCTTGGTAGTAAATGTAAATAGTTTTATTAATGGATCACTGACATCCATTTTCACCACAATTATTTCAGAGAGTATATGGATTAACATAAAAAGCACTAAAGTAACTTCTGTTTGCAGTCAAAGGAGAATTCAACTGGAAGCCAGTCTAACGTGTAGTGTAACAACCAGTCTTTGCCCAACTGCATCATGGGTTtcaaaagagaagaaaagagccAGCTAGATCATACAAAATCTATTCTAAAGAAGTTTCCTCTACAGTTTTGGGGAATTCAATATTACAACGTCACATACACCTCATATCAATATATTAGGTGCGATAAAATAAGATTTACATATAATATTCTACTCTTGATGATCATAAtccaatataatatattataatcCATTCCAATCGAATAAATTAATATGGAGGATGGGGAAGTGGGAGTGGGGTACAGGTTAAAGTGGCTTATGAAACCTAATTTAAATTAAGAAATTGTGTTTGGCTGAGAGCAAAAATGTATGCATTTACCTGTAAAAatttagcaaaatacattttctCCTGTTCATCTTATCTACATATACTCTACTTTCCAGAAGGGAGTTGATTAACATTTATACAATGAGTTTCTACCAAACCAATCATAAGTCACACAGATTTAAGTTCCCTTGAATCTTTACATGGTTAATGTTGAGAAAAAGGAACCCATGATAGTTTGTCTTTTTTATCAATATTGTAAACCTCACAGAGGTATGCTGTCTCTTCAGCTCCCTATTCCGGCAGCTCACATATAGACTCCTAGCATCCTACAGCTCAATACTCATTGCAGATATACAGTTTATAGGCATTCCAGACAACATAAACCCAGAAAACCCAAACTTCAGATCTTCCATCTGTTTGTTCATCTCATCATCTGAGCATGATATTGATTCATGATAATGATTCATTTAATGATATCTATCTCTAGTGTACAGAATGAAAATCAAATGCAAAAATCAAAAGGGTCTCATCAGCCGCTCAGAGCTAGCCTATCTCATTTCCGTAATGGTAGCGTAGCGTTCGGTAACGCTGCCACAAAGCTTTAATATCGGCCCTGCAATATGAATAAGCAAAATAATGTGCGTGTCCCGGGGACATTCACTGTTGCCGTGGCCACAAAGTAAACACACGCAGAAGGAATAGTATGTAGTACCATTGAAAATGATGACAGCATTTGTTTCTTACTCATAAGGTCCCTTGTCCAATGTCCTCCGCCCAACACAATACAAAACCTAGTCATTTACAATCACCTGCAATTGCAGAACCAAAAACCAAACAGCTTAAAACAGTGACTATGCAGCCTGTACATCTGTACTGTGCTCTCTGCATTTCTTTCATGTCACTGATATTACTAGATTAGAGTATCTGTTTAGCAGTCAGAAGGTAATTCATTGCAAGCAGCAAGAGCAATTCAATGGACGCTGTGCAATTATAACATGGCTATTTCTGAGGGGCCTTATTGTAGAGACACTTTCACAAAATGGAAACAGATGGCTGATTGCCCTCTGAAAATGTTATATTgccattgtttgtttttttaacaacACAAAGCCAATGCAGACACATTTCTCTGAAATATTTATTAAGTGGACATTGGCAGATATAACCAACTAGAGATAACCAATTAGccaagctagctaactagctgactataaccctaaccataacccttcaaACATGAACGGTATGATTGGGTTTAACATAACCATGTTGTGCTTTTATGAGGAAATAAATTCAGTTTATACCCCTAAATCGTACAGTTGTTCAACATGTACATATCAAAAAAGTAATGAGACCAGGTAGTTATTTTAGAGGACAATATAGACTAGTGGTGCAACAAGTAAAAGGGGGTTCATGTCCATTTATCATTGGTAGCCGAATTAGAGTAAACTTGAAGTGTTATTGTACTTGCATTTTGGTACATGAATACGTTGAAGCAAATCACTCCTCATTCATTATGCCAAGAGTATTGTATATTTGTTTGTTTGATTAATaaaatgccccccccccaaaagttaTTATATCTGATAGGAACACATTACCCTGTGTTGTAAAGAGGAAAAAGGCCATGGATATTACTCTCTAACATATCTTAATGTCCACAAAACATATGTCTACAAATAATGTGGTGAAGCACAAACATATAGGGCCCTACATTGTGTCACAATAACAAAATGGCACAATATGTGGAAACGTAATTTATTACCAATATATCAAGGTCTCCCCATTAAAACCTCAGGATAGCTTCAGTGATGTCAACTCTCTCTCGTTGAACAGTCATTTTTCGTCAATTAAAGATCTGCAAACCAAGTTCACTGAGTGACTAATGCTCTCTCTTACTGTGGGATTTGCTCACTGTTGGGATTCCATTGCTGTCATCTGCATGTACTAAGGACGTGTTTCTTCTAGTGGAATTATAGAAGTCCGGTGGTCCAAGCCAGGCGTTTAAAAACGCCTCCCACAAAATAGACGGTGACTCAAAGAGAGCAAATCAAAGACTCAATGTTATGTCTGTACAAGGTTTGAGGTAACATAATTTTCTGCTGCCAAAGGACCTACAGACAAGATAAAAAAGAATCAGTCAGAACTTTGACTTTGAATGATCGTGATGTGCTATGTGTGACATAATTGATCTCCCATCAAAACCTAATTTCCCATGTCTGTCTGTAGTTCTTTTATTGCCATGCTCAATGAAGCCAACTCTGTCTTTATGCCATATGTCCAATAAAAAGGTTGAATCATTGTTGTCAAGCAAGGATTCCTTGGTGAGTGTATTTTTGTGTTACGTACGTAAACATCGGACTTGAATACAGATTatttggagatgttgtttcctttTCCAGGAAcggttcttctcctcctccatctcactctctctctttttctgtctcttttGGAATACATGGGTGAACGCTGTCATACCTGTGTCGCCGATGCTGCCATTTTGATGGTACCATGTTGAGTTAGTGTTCCATGTTTCGTTAGTGTCCCTATGCCGCTGTGGTTGATGGTGAATCTGGTAATCCCCTCGATTCCATTGTCCCAGGTTTCGGGACCAATCACGCCCTCCACATTGCCCAGGAGGCTCTTTCTCTGGGAGGCGCAAACCGTCACGGGAACACGGGGGTCATCCCAGTGTTGCAGCTCAAGTTGTCCTTTCCCGGGAGTCGTCGGTCGTTGAACGTGTGCATGTTGATCACTGCATCCGTCTTGACCATGACCGGGACCTGGTGGTGGTGTTTGTGTTTCACACGCCTCCCGCAGGTGAACGACTGTCTGATCTCGTCCACCATGGCACTGCA

Function

NR:

description
glutamate receptor ionotropic, kainate 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU160778 True 3819 lncRNA 0.49 2 38379248 38383209

Neighbor

gene id symbol gene type direction distance location
sh3d21 LOC106605124 coding upstream 467918 37891951 ~ 37911330 (+)
LOC110489035 LOC106605126 coding upstream 488738 37863201 ~ 37890510 (+)
LOC110501519 LOC106605129 coding upstream 615533 37699215 ~ 37763715 (+)
LOC110489000 LOC106605130 coding upstream 714955 37628152 ~ 37664293 (+)
LOC110488991 LOC106605131 coding upstream 757373 37607093 ~ 37621875 (+)
LOC110489135 LOC106605117 coding downstream 335083 38718292 ~ 38734398 (+)
LOC110489149 LOC106605176 coding downstream 374024 38757233 ~ 38786447 (+)
LOC110489163 LOC106605115 coding downstream 406327 38789536 ~ 38823441 (+)
LOC110489178 LOC106605114 coding downstream 440376 38823585 ~ 38847695 (+)
LOC110533769 LOC106583263 coding downstream 471973 38855182 ~ 38857226 (+)
G139785 NA non-coding upstream 30470 38348472 ~ 38348778 (+)
G139751 NA non-coding upstream 52488 38326389 ~ 38326760 (+)
G139750 NA non-coding upstream 52936 38325962 ~ 38326312 (+)
G139741 NA non-coding upstream 63220 38315811 ~ 38316028 (+)
G139738 NA non-coding upstream 65499 38313474 ~ 38313749 (+)
G140175 NA non-coding downstream 246722 38629931 ~ 38630226 (+)
G140192 NA non-coding downstream 256104 38639313 ~ 38639796 (+)
G140196 NA non-coding downstream 259173 38642382 ~ 38642697 (+)
G140198 NA non-coding downstream 260634 38643843 ~ 38644077 (+)
G140205 NA non-coding downstream 268749 38651958 ~ 38652203 (+)
G139179 NA other upstream 327504 38051359 ~ 38051744 (+)
G139101 NA other upstream 435236 37943742 ~ 37944012 (+)
G139089 LOC106605123 other upstream 438534 37919735 ~ 37940714 (+)
G139004 NA other upstream 555238 37777061 ~ 37824010 (+)
LOC110488849 LOC106605147 other upstream 1977277 36354883 ~ 36405310 (+)
LOC110489834 eny2 other downstream 3156086 41539240 ~ 41541654 (+)
G143938 LOC106605049 other downstream 3585165 41968374 ~ 41969317 (+)
G144661 NA other downstream 4127121 42510330 ~ 42566030 (+)
G146054 LOC100136012 other downstream 5347663 43730872 ~ 43731218 (+)
G146091 NA other downstream 5385498 43768707 ~ 43769162 (+)

Expression


Co-expression Network