G140468


Basic Information

Item Value
gene id G140468
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 38806968 ~ 38819055 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU161469
CCATGTCTGGTGTATTTGAGTGAGAAAAACTGGTTTTCTGAACCCTGGTAAAAAGCCGAGTTTGTAGGTAGAAGGGGTTGTAGTGCAATAGAACTCCTTATCCAACTGTCAAATGGAAGCTAAATGAAACTTGTGGACGCCAGCCAACCTCCTGCTCTAAACTGCTAAGCAATTGATTACAACCCGCTTAGCGGCCAAGGATATGTACTCCTACCATCCCTCACTCCACCTACCATTCTACCCATGATGCCGGTGCCCACGGTCTCTGCCTCCATCTCAGAGATGTGCTTGGCGTGCTCATTCCTCACGTAAAACAGCAGCATGATGCCCACCAGACGAACCAGTTTCACTAAGGCGTACTTGGCGTCTGGATGCAGCCCCTCAGACACAGCCTTCATCCACTCGGTCTCCTTGGGCGTGTCGTTGAAGaagaaggcctccttgctcaggTCCAGCTCCTGGAACCTGCAAcacagggtcatgttcagtaggcacGGAACGGAAGAAAAAACGGGGAGGTACTATCCGAAGGTAACCAATTGATAATAATTTTGGTTTTCCGTTgctaaacgttttgcaacagtgTGCCCTGATTAACATGATCAAGGGGAGCATAAGTCCTCTCTTCTCAACTGACTCTGTATTTccgtttttatttaacctttatttaaccagaaaaAGCCCATTAagacc
>TU161464
CCCGGATGGTCTCCAGGGGCATTTCCTGGATGGGGTCCCTCAGTTGGCACAGGGTCTGGATGGACGAGCCGAAGCAGCTGGGCAGGTAGTTGCCCGACACAGAGAGAAAGTAGTCCTTTCCCCGATCCAGGTGGAGCACCAGTATGTCTTCGATTTGCTGGCGGCCTGCGTTGAGCTCCGTGGCGGTGGAGCGGTTCACAAACACCTCCAGGTCGATGTCCACGTTCCCACCCTGAGCGATGAAGCCCTTGGCCGGGTTGGCGGTGAGCCAGGGCTTGCAGTAGGTGCGCTCATCCAGCTTCTGGATGAACTCAAACTGGCACGGGACCTGCCCGTCGTTGTGGAGGGTCAGAGTCTCTGCCTGGTGCTGCATGAACTTCACATCTATGAAGTGGAACTGGGGAGGGAGAGTGATTTGGATTAGATTACACAGGTAGGGAGTAGG

Function

NR:

description
type II inositol 1,4,5-trisphosphate 5-phosphatase-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU161469 False 693 lncRNA 0.36 2 38806968 38810607
TU161464 True 445 lncRNA 0.37 2 38817497 38819055

Neighbor

gene id symbol gene type direction distance location
LOC110489143 LOC106605116 coding downstream 55739 38738678 ~ 38779271 (-)
LOC110489131 LOC106605119 coding downstream 312627 38379192 ~ 38494341 (-)
LOC110489123 LOC106605177 coding downstream 719570 38086165 ~ 38087398 (-)
LOC110489095 LOC106605120 coding downstream 753604 38048897 ~ 38053364 (-)
LOC110489105 LOC106605178 coding downstream 758562 38046700 ~ 38048666 (-)
LOC110489186 NA coding upstream 33178 38852233 ~ 38854258 (-)
LOC110489192 LOC106605112 coding upstream 39451 38858506 ~ 38892046 (-)
LOC110489249 LOC106605107 coding upstream 133769 38952824 ~ 38963780 (-)
LOC110489261 LOC106605105 coding upstream 156550 38975605 ~ 38983972 (-)
LOC110489287 LOC106605101 coding upstream 378611 39197666 ~ 39209506 (-)
G140466 NA non-coding downstream 16030 38789568 ~ 38790938 (-)
G140453 NA non-coding downstream 32051 38773985 ~ 38774917 (-)
G140227 NA non-coding downstream 137630 38669134 ~ 38669338 (-)
G140197 NA non-coding downstream 164382 38642303 ~ 38642586 (-)
G140478 LOC106605114 non-coding upstream 7227 38826282 ~ 38826817 (-)
G140480 LOC100846954 non-coding upstream 9201 38828256 ~ 38828523 (-)
G140481 NA non-coding upstream 9538 38828593 ~ 38828885 (-)
G140483 LOC106583245 non-coding upstream 13734 38832789 ~ 38833029 (-)
G140486 NA non-coding upstream 18388 38837443 ~ 38837669 (-)
G139231 NA other downstream 1054010 37747441 ~ 37752958 (-)
LOC110501508 LOC106605132 other downstream 1343210 37442359 ~ 37463839 (-)
pnrc2 LOC106605140 other downstream 1957623 36844929 ~ 36849373 (-)
G138080 NA other downstream 1978571 36825792 ~ 36828397 (-)
G140479 NA other upstream 8854 38827909 ~ 38828195 (-)
G140879 NA other upstream 244807 39063862 ~ 39064418 (-)
G141363 LOC106605077 other upstream 944878 39763933 ~ 39765473 (-)
LOC110489653 LOC106605072 other upstream 1405567 40224622 ~ 40298333 (-)
G142918 NA other upstream 2044159 40863214 ~ 40863721 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00021290 NA coding CM030130.1 CM030130.1 13896893 ~ 13924592 (-)