G140470 (LOC106605115)


Basic Information

Item Value
gene id G140470
gene name LOC106605115
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 38815558 ~ 38821894 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU161471
ACACTGACTGGTGTTGGAGCAGCACTCCAGGCACTGCTGGTACAGGGAGAAGGGGACCACAGGCTCAGGGAGGGCATCAAGGAAGATGAGCAGTGCTTCTGCCACAGAGTGGTTACTGCCAGGGAGCGAGTCTGGCATGCCAGTGTCAAGACAATCCCTTATCTCCACAAATTCACTGCGGAGCCCAGGTTGTTGAAATAGTTCCCCCTGTTTAGGAGCATTACGGTATAGGTGGTCCACCATCTGCCATATCTCTTTAGGGATATCCAGGGGCTTATCGATGATTAAAGTTCTGGTCTCATCACCTGACAACGTCTttagaaagaagaaaaaaagtgacattttagTGAAATGGGTTTAAATCCTTTACCTAACCTTTCTTGAACAACATGTCCTTAGAGGACAATGTGTTGTAGCTAcagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttatt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU161471 True 566 lncRNA 0.41 4 38815558 38821894

Neighbor

gene id symbol gene type direction distance location
LOC110489143 LOC106605116 coding downstream 64329 38738678 ~ 38779271 (-)
LOC110489131 LOC106605119 coding downstream 321217 38379192 ~ 38494341 (-)
LOC110489123 LOC106605177 coding downstream 728160 38086165 ~ 38087398 (-)
LOC110489095 LOC106605120 coding downstream 762194 38048897 ~ 38053364 (-)
LOC110489105 LOC106605178 coding downstream 767152 38046700 ~ 38048666 (-)
LOC110489186 NA coding upstream 30339 38852233 ~ 38854258 (-)
LOC110489192 LOC106605112 coding upstream 36612 38858506 ~ 38892046 (-)
LOC110489249 LOC106605107 coding upstream 130930 38952824 ~ 38963780 (-)
LOC110489261 LOC106605105 coding upstream 153711 38975605 ~ 38983972 (-)
LOC110489287 LOC106605101 coding upstream 375772 39197666 ~ 39209506 (-)
G140466 NA non-coding downstream 24620 38789568 ~ 38790938 (-)
G140453 NA non-coding downstream 40641 38773985 ~ 38774917 (-)
G140227 NA non-coding downstream 146220 38669134 ~ 38669338 (-)
G140197 NA non-coding downstream 172972 38642303 ~ 38642586 (-)
G140478 LOC106605114 non-coding upstream 4388 38826282 ~ 38826817 (-)
G140480 LOC100846954 non-coding upstream 6362 38828256 ~ 38828523 (-)
G140481 NA non-coding upstream 6699 38828593 ~ 38828885 (-)
G140483 LOC106583245 non-coding upstream 10895 38832789 ~ 38833029 (-)
G140486 NA non-coding upstream 15549 38837443 ~ 38837669 (-)
G139231 NA other downstream 1062600 37747441 ~ 37752958 (-)
LOC110501508 LOC106605132 other downstream 1351800 37442359 ~ 37463839 (-)
pnrc2 LOC106605140 other downstream 1966213 36844929 ~ 36849373 (-)
G138080 NA other downstream 1987161 36825792 ~ 36828397 (-)
G140479 NA other upstream 6015 38827909 ~ 38828195 (-)
G140879 NA other upstream 241968 39063862 ~ 39064418 (-)
G141363 LOC106605077 other upstream 942039 39763933 ~ 39765473 (-)
LOC110489653 LOC106605072 other upstream 1402728 40224622 ~ 40298333 (-)
G142918 NA other upstream 2041320 40863214 ~ 40863721 (-)

Expression


Co-expression Network