G140490 (LOC106605114)


Basic Information

Item Value
gene id G140490
gene name LOC106605114
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 38841682 ~ 38842212 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU161491
GGGCTGCAACAGGCTCTGGGTGTGGCTGTGGCTTGGGGTGAAAGTGGGGGCAGAGGCTGGGGGCACCAGGGCAGGGTTGGTGTTGCTGGCCAAAGGCACGGTGTGAGTGTGAGCCACGGCCGGCAGCGGCACAGTCTCTGTGGTGGCGACTACAGCGCCCAGAGCCGCGAGGGCTGGGCTTGGCACCACTACTGGCGCAATAGAGGGCACTACTGGAGCAGTCTGGGCGGGCAGTGCCACATAGGGGGCAGGCACATCTGGCGTCTGCAGGGCAGTGGGTAAGGGTACGAAGGTGGCGTGGGGCTGGGTGGAGCTGACTGTGGTAATATTACTAATGGGGGCAGGAGGTGCTGGAACCTGGGAAGAGGGGGTTTGGCTTAGAGGAAGCTGGGAGGAAGCCTCCAggacagtggtggtggtggtgtgggagtgagtgtgagagtgggaGTGGGaacaggaggatgaggaggaagggaCAAGGGAGAACGAGAAGGAGATGGGGGTGGAGCCATCGCCCATGGTGGACTGGCC

Function

NR:

description
metal regulatory transcription factor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU161491 True 531 lncRNA 0.42 1 38841682 38842212

Neighbor

gene id symbol gene type direction distance location
LOC110489143 LOC106605116 coding downstream 90453 38738678 ~ 38779271 (-)
LOC110489131 LOC106605119 coding downstream 347341 38379192 ~ 38494341 (-)
LOC110489123 LOC106605177 coding downstream 754284 38086165 ~ 38087398 (-)
LOC110489095 LOC106605120 coding downstream 788318 38048897 ~ 38053364 (-)
LOC110489105 LOC106605178 coding downstream 793276 38046700 ~ 38048666 (-)
LOC110489186 NA coding upstream 10021 38852233 ~ 38854258 (-)
LOC110489192 LOC106605112 coding upstream 16294 38858506 ~ 38892046 (-)
LOC110489249 LOC106605107 coding upstream 110612 38952824 ~ 38963780 (-)
LOC110489261 LOC106605105 coding upstream 133393 38975605 ~ 38983972 (-)
LOC110489287 LOC106605101 coding upstream 355454 39197666 ~ 39209506 (-)
G140486 NA non-coding downstream 4013 38837443 ~ 38837669 (-)
G140483 LOC106583245 non-coding downstream 8653 38832789 ~ 38833029 (-)
G140481 NA non-coding downstream 12797 38828593 ~ 38828885 (-)
G140480 LOC100846954 non-coding downstream 13159 38828256 ~ 38828523 (-)
G140478 LOC106605114 non-coding downstream 14865 38826282 ~ 38826817 (-)
G140491 NA non-coding upstream 1211 38843423 ~ 38843638 (-)
G140493 NA non-coding upstream 2448 38844660 ~ 38844881 (-)
G140456 NA non-coding upstream 5013 38847225 ~ 38847734 (-)
G140496 NA non-coding upstream 13676 38855888 ~ 38856108 (-)
G140498 NA non-coding upstream 14491 38856703 ~ 38857020 (-)
G140479 NA other downstream 13487 38827909 ~ 38828195 (-)
G139231 NA other downstream 1088724 37747441 ~ 37752958 (-)
LOC110501508 LOC106605132 other downstream 1377924 37442359 ~ 37463839 (-)
pnrc2 LOC106605140 other downstream 1992337 36844929 ~ 36849373 (-)
G140879 NA other upstream 221650 39063862 ~ 39064418 (-)
G141363 LOC106605077 other upstream 921721 39763933 ~ 39765473 (-)
LOC110489653 LOC106605072 other upstream 1382410 40224622 ~ 40298333 (-)
G142918 NA other upstream 2021002 40863214 ~ 40863721 (-)
LOC110489860 LOC106605053 other upstream 2872334 41714269 ~ 41730507 (-)

Expression


Co-expression Network