G140870


Basic Information

Item Value
gene id G140870
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39043275 ~ 39044478 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU161907
GAAAAACAAAGACCAAAAAAAAATGCAAAGGAAATTGGAGTTGGCTCACAAACTACCACACTCAGGGGTGACAAAGACCCACCTCTTTCATAAATAAATGTGTATGATAACGTTTGACATTATATATAACTCTATTTTCCAATATCGGGGCATCACTAAACCTTTTTAGCGCAGGCTAAAACATAGCCCTACCAAGGGGTCCTTTCGCCAAGACCTTCCACACATACTTCACAGACTGAGATTGAACAAGAGTCGACATCCTAGAATAAGGATGTTGATCTCGAAGGATAGGGCCTGCTAGTCTGTGCCATACTTGACCTTTGGCTGTAATGATATGCCCCTTGTACGGTGTCCATGTTAGGAAATCCCCGGAACGGTGTACATTTTAGGACATTCCTGTTAGAAGTATTCAGTACAGTCCACAGCAGAGTGTGTCTACTGAGGGAGACAGGAGAGCTGGTTCATGTTCTTTAGGCATCAAACGAACAAAAACTAACTGAATCAGAGTGGGACAACCTGGactttgtccaataagaaacacacaTTTTTGGTTTCCGTTGCAAAGCGCTTTAAGGCGGTTCGCAATGGCGTGCGGCGTGtggcctaatgaacatgacccatggCTATCTCCTGTCCCGAGGCTTTGTATGGTGGCTAGAGCTACAGTAAAGAGACCGTGGTCCAATTCATGGGGGCTGGTGTAGCCTAGCGTATAGGGCGTGGATCCGGATGTCCGCCTTCACAAATCACCATGCCATATACACCCTGTCCCTGAATGTCCCTTCAGAGCGTCAACATTACAACGACAACAAGAGAGAACGACGAACAAAGGAAACGCGCTGAACGTGGACATGTGTGGAAGGAAGGTAAAGAAGGAACAACAACCCTGTTTGACAGAGATTAATGCCAATCTGATTGGCTGATTGTTTCCATCTGTCTTTTCTACCCCTCTCCGCCTATATGTACAGTACCTTATATCAGAGAACCAGTCTCAACTCAAACTCCCAAAGGCCCAAAACACAGCCAAGACGACCTCATAACATGTGATAGGGAACACAAGATACAGATGATGACAACGATGCTGATGActtacaacacaaacacactaccCGTTTAAGACACACGCGCCCAGAAGGGACGGGGAAAGGGACATGATCATGTGATTATATTGCTGTCGACCTACTATCAACCTGCGTTTACTTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU161907 True 1204 lncRNA 0.45 1 39043275 39044478

Neighbor

gene id symbol gene type direction distance location
LOC110489261 LOC106605105 coding downstream 59303 38975605 ~ 38983972 (-)
LOC110489249 LOC106605107 coding downstream 79495 38952824 ~ 38963780 (-)
LOC110489192 LOC106605112 coding downstream 151229 38858506 ~ 38892046 (-)
LOC110489186 NA coding downstream 189017 38852233 ~ 38854258 (-)
LOC110489143 LOC106605116 coding downstream 292046 38738678 ~ 38779271 (-)
LOC110489287 LOC106605101 coding upstream 153188 39197666 ~ 39209506 (-)
LOC118939935 LOC106605099 coding upstream 174073 39218551 ~ 39220640 (-)
LOC110489325 tpi1b coding upstream 184334 39228812 ~ 39233769 (-)
LOC110489429 LOC106605091 coding upstream 293711 39338189 ~ 39347511 (-)
LOC110489468 LOC106605089 coding upstream 306454 39350932 ~ 39365872 (-)
G140871 NA non-coding downstream 1639 39041526 ~ 39041636 (-)
G140862 NA non-coding downstream 15471 39027567 ~ 39027804 (-)
G140857 NA non-coding downstream 23776 39019262 ~ 39019499 (-)
G140846 LOC106605103 non-coding downstream 40659 39001366 ~ 39002616 (-)
G140506 ppp1r8 non-coding downstream 54202 38970629 ~ 38989073 (-)
G140876 NA non-coding upstream 12191 39056669 ~ 39056906 (-)
G140884 NA non-coding upstream 26801 39071279 ~ 39071687 (-)
G140887 NA non-coding upstream 28134 39072612 ~ 39072823 (-)
G140914 NA non-coding upstream 50065 39094543 ~ 39094766 (-)
G140918 NA non-coding upstream 55940 39100418 ~ 39100651 (-)
G140479 NA other downstream 215080 38827909 ~ 38828195 (-)
LOC110489105 LOC106605178 other downstream 994609 38046700 ~ 38048666 (-)
G139231 NA other downstream 1290317 37747441 ~ 37752958 (-)
LOC110501508 LOC106605132 other downstream 1579517 37442359 ~ 37463839 (-)
pnrc2 LOC106605140 other downstream 2193930 36844929 ~ 36849373 (-)
G140879 NA other upstream 19384 39063862 ~ 39064418 (-)
G141363 LOC106605077 other upstream 719455 39763933 ~ 39765473 (-)
LOC110489653 LOC106605072 other upstream 1180144 40224622 ~ 40298333 (-)
G142918 NA other upstream 1818736 40863214 ~ 40863721 (-)
LOC110489860 LOC106605053 other upstream 2670068 41714269 ~ 41730507 (-)

Expression


Co-expression Network