G140658


Basic Information

Item Value
gene id G140658
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39230619 ~ 39231565 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU161668
AGGCTCTGATAATATATGTGTACGCCTGAGCAGAATCTGTGGTTTTGTGTAACACACTCATTATGAATCAGTGATTTCAGTGACAATACCTGCGAAGTGCTTCGTCTGTGCGTTGATGACCTTCTCTGTGATGCCAGCTTCCCTCTCGTCCAGCTTCTCACCGATGCAGGCAATGACACCCAGGCCATTCTCCAGGGCGTGGGCGCACTTCTGACCAATAAGCATCAGTCTCTCCAAACACCCAGCGCCTCTCAGAGTGGCCCAGGATCACCCAGTGCACGCCAACGTCCTTGATCATCGCAGggctgagaaggagagagaggggccataAAGGAAGTGAGAGAACGGAAAAAGAAAGAGCGCGTGAGTAAAA
>TU161667
ACCAGCACTCTACCAAATAAGCCATTTACCTCATCAGTCTCTCCAAACACCCAGCGCCTCTCAGAGTGGCCCAGGATCACCCAGTGCACGCCAACGTCCTTGATCATCGCAGgCTGATCTCCCCGGTGAAGGCACCCCCCTTGACCTTGTAGCAGTTCTGAGCGGCCACTCCGATCTTAGGGTCCAGCTTGGCCCTGGCGAACTCAAGGTAGATTGACGGGGCGCCGCAGACCACCTctgcaagcagagagagagagaaccaacacGGTC

Function

NR:

description
triosephosphate isomerase

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU161668 False 373 lncRNA 0.35 2 39230619 39231307
TU161667 True 270 lncRNA 0.35 2 39231126 39231565

Neighbor

gene id symbol gene type direction distance location
atp1a3 atp1a3 coding upstream 35335 39170273 ~ 39195284 (+)
LOC110489280 LOC106605103 coding upstream 185962 39000721 ~ 39044657 (+)
LOC110489273 LOC106605104 coding upstream 240149 38987069 ~ 38990470 (+)
LOC110489269 LOC106605108 coding upstream 256662 38861507 ~ 38973957 (+)
LOC118944175 NA coding upstream 265118 38965348 ~ 38965501 (+)
LOC118944148 NA coding downstream 2795 39234360 ~ 39234415 (+)
LOC110489329 LOC106605098 coding downstream 4962 39236527 ~ 39255790 (+)
LOC110489358 LOC106605095 coding downstream 24861 39256426 ~ 39298064 (+)
LOC110489375 LOC106605093 coding downstream 66844 39298409 ~ 39319882 (+)
LOC110489418 LOC106605090 coding downstream 96895 39328460 ~ 39337579 (+)
G140712 NA non-coding upstream 49858 39177779 ~ 39180761 (+)
G140707 NA non-coding upstream 61880 39168466 ~ 39168739 (+)
G140705 NA non-coding upstream 63968 39166274 ~ 39166651 (+)
G140703 NA non-coding upstream 65426 39164862 ~ 39165193 (+)
G140701 NA non-coding upstream 67293 39163117 ~ 39163326 (+)
G140753 NA non-coding downstream 77104 39308669 ~ 39325188 (+)
G140757 NA non-coding downstream 94643 39326208 ~ 39326426 (+)
G140758 NA non-coding downstream 97760 39329325 ~ 39329577 (+)
G140766 NA non-coding downstream 110217 39341782 ~ 39347457 (+)
G140771 NA non-coding downstream 117960 39349525 ~ 39349785 (+)
G139179 NA other upstream 1178875 38051359 ~ 38051744 (+)
G139101 NA other upstream 1286607 37943742 ~ 37944012 (+)
G139089 LOC106605123 other upstream 1289905 37919735 ~ 37940714 (+)
G139004 NA other upstream 1406609 37777061 ~ 37824010 (+)
LOC110488849 LOC106605147 other upstream 2828648 36354883 ~ 36405310 (+)
LOC110489834 eny2 other downstream 2307730 41539240 ~ 41541654 (+)
G143938 LOC106605049 other downstream 2736809 41968374 ~ 41969317 (+)
G144661 NA other downstream 3278765 42510330 ~ 42566030 (+)
G146054 LOC100136012 other downstream 4499307 43730872 ~ 43731218 (+)
G146091 NA other downstream 4537142 43768707 ~ 43769162 (+)

Expression


Co-expression Network