G140772


Basic Information

Item Value
gene id G140772
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39350136 ~ 39350359 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU161791
GAGAGAAGATGTGAGTGTGTCCGACTGGATGTGAATTATTAAATGATTTCTAGTTGGATTATGATTCCATATTCTAAATGGGAGACGTTTCCTAAGCTTCATAAACAAATGCACTCATTTATGAGGGATTAACGGtaatctctctttctatccttccCCCCTTCTgcatacctctctctgtctctttctgcctctccctcgctctccccccGTAAGCATCAGTT

Function

NR:

description
reticulophagy regulator 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU161791 True 224 lncRNA 0.39 1 39350136 39350359

Neighbor

gene id symbol gene type direction distance location
LOC110489418 LOC106605090 coding upstream 12557 39328460 ~ 39337579 (+)
LOC110489375 LOC106605093 coding upstream 30254 39298409 ~ 39319882 (+)
LOC110489358 LOC106605095 coding upstream 52072 39256426 ~ 39298064 (+)
LOC110489329 LOC106605098 coding upstream 94346 39236527 ~ 39255790 (+)
LOC118944148 NA coding upstream 115721 39234360 ~ 39234415 (+)
LOC110489446 ubp5 coding downstream 16049 39366408 ~ 39378288 (+)
LOC110489493 LOC100169854 coding downstream 29233 39379592 ~ 39385031 (+)
LOC110501538 LOC100301666 coding downstream 53462 39403821 ~ 39412741 (+)
LOC110489499 LOC106605088 coding downstream 63097 39413456 ~ 39420001 (+)
LOC110489505 csn7a coding downstream 80247 39430606 ~ 39440426 (+)
G140771 NA non-coding upstream 351 39349525 ~ 39349785 (+)
G140766 NA non-coding upstream 2679 39341782 ~ 39347457 (+)
G140758 NA non-coding upstream 20559 39329325 ~ 39329577 (+)
G140757 NA non-coding upstream 23710 39326208 ~ 39326426 (+)
G140753 NA non-coding upstream 24948 39308669 ~ 39325188 (+)
G140792 NA non-coding downstream 52975 39403334 ~ 39403625 (+)
G140793 NA non-coding downstream 71999 39422358 ~ 39422680 (+)
G140794 NA non-coding downstream 79740 39430099 ~ 39430309 (+)
G140809 NA non-coding downstream 87596 39437955 ~ 39438584 (+)
G139179 NA other upstream 1298392 38051359 ~ 38051744 (+)
G139101 NA other upstream 1406124 37943742 ~ 37944012 (+)
G139089 LOC106605123 other upstream 1409422 37919735 ~ 37940714 (+)
G139004 NA other upstream 1526126 37777061 ~ 37824010 (+)
LOC110488849 LOC106605147 other upstream 2948165 36354883 ~ 36405310 (+)
LOC110489834 eny2 other downstream 2188936 41539240 ~ 41541654 (+)
G143938 LOC106605049 other downstream 2618015 41968374 ~ 41969317 (+)
G144661 NA other downstream 3159971 42510330 ~ 42566030 (+)
G146054 LOC100136012 other downstream 4380513 43730872 ~ 43731218 (+)
G146091 NA other downstream 4418348 43768707 ~ 43769162 (+)

Expression


Co-expression Network