G140804


Basic Information

Item Value
gene id G140804
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39516493 ~ 39550773 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU161831
TGCTGTTCTATTGAAACGTTGGTGCCTCCTGAAGAACTTCATAACACGTTCATGAGCAGTTCATAAGGTATCAAATTGTGGTAGTTGACATAAGAATGAAATAATGCTCATGTACTGCTTATGAACTTTTTGATTATGAATGCATTATGAAGTCCTTATTTAAGTACCCTTCAAATGAAATGTTACGGAAATGTCTCTGCCACCTGATCAAACAATGACAAGGTTCAGTAGTTGACTCTCAGTCCCtttgaaaaatataaaagcaacatgtaaagttttggtcctgtttcatgagctgaaataaaatatccttgAAATTTTCCATACGGACAAAAAGATTATCTCAAATTGTGTGCAGAAatttgcttacatccctgttagggagcatttctcctttgccaagataatccatccacctgacaggtgtggcatatcaagaagctgatttaacagcatgatcattacacaggtgcaccttgtgctgggggacaataaaaggccaccctAAAATGTGCGGAcacctgatgaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU161831 True 529 lncRNA 0.38 2 39516493 39550773

Neighbor

gene id symbol gene type direction distance location
ubxn11 ubxn11 coding upstream 31099 39469654 ~ 39485394 (+)
LOC110489505 csn7a coding upstream 76067 39430606 ~ 39440426 (+)
LOC110489499 LOC106605088 coding upstream 96492 39413456 ~ 39420001 (+)
LOC110501538 LOC100301666 coding upstream 105974 39403821 ~ 39412741 (+)
LOC110489493 LOC100169854 coding upstream 131462 39379592 ~ 39385031 (+)
znf407 LOC106605077 coding downstream 18712 39569485 ~ 39766378 (+)
LOC110489609 LOC106605074 coding downstream 271107 39821880 ~ 39862520 (+)
LOC110489640 LOC106583530 coding downstream 565185 40115958 ~ 40292372 (+)
galr1a LOC106605071 coding downstream 758405 40309178 ~ 40319263 (+)
LOC110489685 LOC106605069 coding downstream 1085326 40636099 ~ 40653382 (+)
G140834 NA non-coding upstream 14183 39502087 ~ 39502310 (+)
G140809 NA non-coding upstream 77909 39437955 ~ 39438584 (+)
G140794 NA non-coding upstream 86184 39430099 ~ 39430309 (+)
G140793 NA non-coding upstream 93813 39422358 ~ 39422680 (+)
G141146 NA non-coding downstream 10106 39560879 ~ 39561194 (+)
G141148 NA non-coding downstream 11662 39562435 ~ 39562737 (+)
G141226 NA non-coding downstream 145588 39696361 ~ 39699522 (+)
G141245 NA non-coding downstream 174390 39725163 ~ 39725428 (+)
G141248 NA non-coding downstream 177987 39728760 ~ 39728997 (+)
G139179 NA other upstream 1464749 38051359 ~ 38051744 (+)
G139101 NA other upstream 1572481 37943742 ~ 37944012 (+)
G139089 LOC106605123 other upstream 1575779 37919735 ~ 37940714 (+)
G139004 NA other upstream 1692483 37777061 ~ 37824010 (+)
LOC110488849 LOC106605147 other upstream 3114522 36354883 ~ 36405310 (+)
LOC110489834 eny2 other downstream 1988522 41539240 ~ 41541654 (+)
G143938 LOC106605049 other downstream 2417601 41968374 ~ 41969317 (+)
G144661 NA other downstream 2959557 42510330 ~ 42566030 (+)
G146054 LOC100136012 other downstream 4180099 43730872 ~ 43731218 (+)
G146091 NA other downstream 4217934 43768707 ~ 43769162 (+)

Expression


Co-expression Network