G141226


Basic Information

Item Value
gene id G141226
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39696361 ~ 39699522 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU162331
TACACCACGTCAATAATACACACCTACAACGCTACACTGTATGGCTCAGCTGGTACTATTAACACCAAGTTGTAAGTTCAATTCCCACATAGATTGTACACAAAGTGAAAAATGTAGGTATTTACTGCACTGTAAGTCACTTAGAATACATTTCTAAGTGGTGTAAAATACcagtacactactacaccactttacctcgctacactactataccactttaCCTCGTTACACTACTACACCGCTTTACCTCGCTACACTACTACACAGCTTTACCtcgctacactactataccactttacctcgctacactactacaccactttacctcgctacactactataccactttaCCTCgttacactactacaccactttacctcgctacactactataccactttacctcgctacactactacaccgctttacctcgctacactactataccactttacctcgctacactactacaccgctttacctcgctacactactataccactttacctcgctacactactacaccgctttacctcgctacactactataccactttaCCTCGTTACACTACTACACCGCTTTACCtcgctacactactataccactttacctcgctacactactacaccgctttacctcgctacactactataccactttacctcgctacactactacaccactttacctcgctacactactacacagctttacctcgctacactactataccactttacctcgctacactactacaccgctttacctcgctacactactacacagctttacctcgctacactactataccactttacctcgctacactactacaccgctttacctcgctacactactataccactttaCCTCGCTACACTACTACACCGCTTTACCTCGCTACACTACTACACAGCTTTACCTCGCTACACTACTACACCGCTTTACCTCGCTACACTACTACACAGCTTTACCTCGCTACACTACTATACCTTTTTCCCTGCTACACTACTACACCGCTTTACCTCGCTACACTACTACACCGCTTTACCTCGCTACACTACTACACAGCTTTACCtcgctacactactataccactttacctcgctacactactataccactttacctcgctacactactacactactacaccgctttacctcgctacactactacacagctttacctcgctacactactacacagctttacctcgctacactactacaccgctttacctcgctacactactataccactttaCCTCGCTACGCTACTACACCACTTTACCTCGCTACACTACTACACCGCTTTACCtcgctacactactataccactttacctcgctacactactacacagctttacctcgctacactactacaccgctttacctcgctacactactacaccgctttacctcgctacactactacaccgctttacctcgctacactactacaccgctttacctcgctacactactacaccgctttacctcgctacactactataccactttaCCTCGCTACACTACCACACAGCTTTACCtcgctacactactacaccactttacctcgctacactactatataactttacctcgctacactactacaccactttacctcgctacactactatacctctttacctcgctacactactacaccactttACCTCGCTACACTACTACACAGCTTTAcctcactacactactacacctctttacctcgctacactactataccactttaCCTCGCTACATTACTACACCGCTTTACCTCGCTACACTACTATACCGCTTTACCtcgctacactactataccactttacctcgctacactactacaccgctttacctcgctacactactacaccactttACCTCCCTACACTACTTCACCACTTCACTTCACgacactactataccactttacctcgctacactactataccactttaCCTttctacactactacaccactttACTTtgctacactactataccactttaCCTCGCTACACCACTACACCTACTGTAGCACAGCCACAGGAGACACATGGGCATCATCCACAGGCATTGGCTTTGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU162331 True 2098 lncRNA 0.38 2 39696361 39699522

Neighbor

gene id symbol gene type direction distance location
LOC110489590 LOC106605080 coding upstream 148998 39540706 ~ 39547363 (+)
LOC110489581 LOC106605172 coding upstream 165503 39527602 ~ 39530858 (+)
LOC110489572 LOC106605173 coding upstream 171430 39521563 ~ 39524931 (+)
LOC110489537 LOC106605082 coding upstream 175739 39500145 ~ 39520622 (+)
ubxn11 ubxn11 coding upstream 210967 39469654 ~ 39485394 (+)
LOC110489609 LOC106605074 coding downstream 122358 39821880 ~ 39862520 (+)
LOC110489640 LOC106583530 coding downstream 416436 40115958 ~ 40292372 (+)
galr1a LOC106605071 coding downstream 609656 40309178 ~ 40319263 (+)
LOC110489685 LOC106605069 coding downstream 936577 40636099 ~ 40653382 (+)
LOC110489695 LOC106605067 coding downstream 1081504 40781026 ~ 40847759 (+)
G141148 NA non-coding upstream 133624 39562435 ~ 39562737 (+)
G141146 NA non-coding upstream 135167 39560879 ~ 39561194 (+)
G140804 NA non-coding upstream 145588 39516493 ~ 39550773 (+)
G140834 NA non-coding upstream 194051 39502087 ~ 39502310 (+)
G140809 NA non-coding upstream 257777 39437955 ~ 39438584 (+)
G141245 NA non-coding downstream 25641 39725163 ~ 39725428 (+)
G141248 NA non-coding downstream 29238 39728760 ~ 39728997 (+)
G141260 NA non-coding downstream 42900 39742422 ~ 39742703 (+)
G141261 NA non-coding downstream 43366 39742888 ~ 39743107 (+)
G141262 NA non-coding downstream 43786 39743308 ~ 39743592 (+)
G139179 NA other upstream 1644617 38051359 ~ 38051744 (+)
G139101 NA other upstream 1752349 37943742 ~ 37944012 (+)
G139089 LOC106605123 other upstream 1755647 37919735 ~ 37940714 (+)
G139004 NA other upstream 1872351 37777061 ~ 37824010 (+)
LOC110488849 LOC106605147 other upstream 3294390 36354883 ~ 36405310 (+)
LOC110489834 eny2 other downstream 1839773 41539240 ~ 41541654 (+)
G143938 LOC106605049 other downstream 2268852 41968374 ~ 41969317 (+)
G144661 NA other downstream 2810808 42510330 ~ 42566030 (+)
G146054 LOC100136012 other downstream 4031350 43730872 ~ 43731218 (+)
G146091 NA other downstream 4069185 43768707 ~ 43769162 (+)

Expression


Co-expression Network