G141522


Basic Information

Item Value
gene id G141522
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 40004230 ~ 40007277 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU162655
CTGATGAAACCGGTTGAATGGTGCCATATTTGTGTATTTAATGTGGACATGATGACTTTACATTTTCTGCAACGATGTACAAAACTTTAACAGAACCGAGAAGGTCTCAGACGAGGTAGAGCTTTCATCGGGGACAGTGAAAACAAAGTGTAAAAACACATCTGAAAAGGATCAAATAAAACGAGTCCTGTCTGCTTCTGCTCTGATCATTGTAACTAATAAATACAGATGTCAACCAAATACATTCCAAATAATGTCATCTACGGAACAATTACAATGTAGTTAATTACAAATAAAAagccaacgcacacacacacacacacacaacttggaGACATTGTTAAAACCCCAACCAAATAGAAATAATGACTTTCACCACGTTCTTTGGGAGGGTAACCATGGCTATCTACTGAAGAAGttctacttttttttttagcaaagagagagagactaaaaacaCGCTCTTTATGAAACATATTTATGCGCCTATCGTTTTCCATTCGAAAACTGAACTGAGCAgtgtaataaaaaaaacaaacgcctaaaaaaaaaaaaacacatagcAAATGATATTAAATGAATCATGGATATCTATAATAATAGAACAAGACAGAAGACAGTTATAACGGGTTAAAGCAGTAACCTAGACTAAGTGCACCGGAAATGCCATTTGGTATCTAACGCTGTAACGGGTTCGGTACGAttataatacagacacacacacttacatacacacacgcacaaatactcactctctcactcccgcGTGGTCTGCTCATATCTGCTAAGTCACACTTAGGAGTACAAATGTGTATTTTAGGAGTTCATCTTAAAGGGTCATTCTGTACAACAGTATTTAAGGGCACTAATTATTAAGGACACTACTTGATAGGCTATATTATCCGTTTCAAGTATTTGACTATCCATCTttaatatacacatacagtatgtgtaggtaTACGCAAGCACATTGTTGTACGCATATTCAACCAACCATATAAAGTAACTGACACAGAAATGGTTTCATCTTGTGTTCATGTAAAAACTACTACCGAGGTCTCAAAGTAGACAGTATTATATCCCATGACAATAATTCCATATCTTTGAAtcccccccccaatttttttttgttgttttaattCTAAACAGCTGATAATTATTCACTTCTATTTGTCTCACACTTTGCCATTTGCAGTGTCTTGTACAGTGCACGTAGCCTTGCGTGTATACAACGTTTGCTCAAAAAGACTGTCTGACCAATAGTCTGCTTGTCTGAACGAACATGTTGACATCCCATGCACCAAAACAAGAATTACTAACTTATTAGAGCTTCACCTCACCTGGgtggtgttcattaggcacccaATGGAAGAagatggactgaaacagggagggccCTTCTGGATTTGTCCAATCAGAAATGCTCatttttgttttccgttgcaaaaaatgttttttttggtgTCTGCCCTAACAAACAGGTAATCCAATAGTCATAGGCATGGCTATGAATCCAGGAGGCGTTTTATGAGGGTGAatgcaactttgagaaaaacttCACACATATGGTTACAGTGAAGCCTCTCCTTatatcttatatacagtatacaagcATGGCTTTGGTCCTCACTTCATACCTGGCTGTACAAAAACCAAAACAAGCTTTTATTGCAAAGGAGGTAGTATGCAAAGCGTCTAAAGGGAGTCTAATACGCAGAGGTAATCAAGGAggggcaaaacacacacacaagcagcacacacacaagccgcacacacacaccgcagccATCAGAAACAAAACACTGTCTCCAACAATGCTCCCTGAAAGCTCTAGACGCCTGACCTCTCAACCGCTCCCCCCCCAAAAGCTACTGTTGTGAGGACTAGCTTTTAGGAGTATACTCTTACTCAAGTAGAAAAGAGAGTAAGGGCAACTTGAACCAAACAGTCAGACCACTTTATTCCTGCTAAGAGGTTTCAGTAAGTGGGTCTAATTTGAGGTTGGAGgtgtgggtgtgggaggaggACTACGCTCGGATCAGAGGGATCAGAAAAcggcctcttcttctcctcccaaTAATTGAATGACTGTTAAAACCGCACGCTCGTTTATACCCCCCATTAAAAGCACATACTCTTTTTAATGAGCAGCAAAGCAGGCACCTCCTCTCACACTGTCattagccctctctctctcttgttctctctctttaatAACCGACCAAACAGCCTCGGAGTCAGATCGTGTAGTGGTCACTTCACTATAGCCACTCATACTGGACTCATCATAGTGGTGCTCGAgaggaagaacacacacacacacacacacacacacacaccgtcttgAGCTTGTCAAGTTAGCTGCAATCGGAGGGTTAGCTAAGTGAGTTCAGTTCAGTCAGTGTAAACATCACCAACTTGGCTGCTCCATTCTGCCGTGTGTTATTAAGGGATCAGTGTCCTGAGGAATGCACAAAACCATTTAATCACAATCTAAATCAAATAGGGAAAAATAGGAAAATGGAAAGCTATAGGAACGTCACTATGCCACCATGCCATCCTTGCCCATGGGTCCACAGAGGAAACAAAACAGCATTTGGTTGTGTCCGATTTTTCTTCTCTTTCCAAGAaatccttttatttcttatttttaaacACATTTCAAATAGTCCTGGTAATATTTCATCTAAAAGGGCAATAGGTGAGTTCATTCTGTTCATTCACTCTGTCAGGTGGTGTCTCTGACACAGCTCTCAGGTCTCTCTGCTGTCTTTGGGTAGGGGCTGGGAATATGGATAGAGTCTCTATCTCTATCTTAGGCCCTGGGGATGTCACGTTGGTGGGTCTGTtattacctcctcctcctcctgttcgaGGCCCAGTCCCGGTGGTCTGTAATCAGGGTACTGGGCGTTGTCGAAATGCACGTGGTGGACACTCTGGACATGGGTCTTTAGGTTCCCTTTCTGAGAGGCTCGGTACGGGCAGAGGCGGCACCGGAA

Function

NR:

description
PREDICTED: zinc finger protein 516-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU162655 True 3002 lncRNA 0.48 2 40004230 40007277

Neighbor

gene id symbol gene type direction distance location
LOC110489609 LOC106605074 coding upstream 141710 39821880 ~ 39862520 (+)
znf407 LOC106605077 coding upstream 237852 39569485 ~ 39766378 (+)
LOC110489590 LOC106605080 coding upstream 456867 39540706 ~ 39547363 (+)
LOC110489581 LOC106605172 coding upstream 473372 39527602 ~ 39530858 (+)
LOC110489572 LOC106605173 coding upstream 479299 39521563 ~ 39524931 (+)
LOC110489640 LOC106583530 coding downstream 108681 40115958 ~ 40292372 (+)
galr1a LOC106605071 coding downstream 301901 40309178 ~ 40319263 (+)
LOC110489685 LOC106605069 coding downstream 628822 40636099 ~ 40653382 (+)
LOC110489695 LOC106605067 coding downstream 773749 40781026 ~ 40847759 (+)
LOC110489783 LOC106605064 coding downstream 873897 40881174 ~ 40885140 (+)
G141507 NA non-coding upstream 19688 39976639 ~ 39984542 (+)
G141503 NA non-coding upstream 35860 39968068 ~ 39968370 (+)
G141486 NA non-coding upstream 61858 39942149 ~ 39942372 (+)
G141429 NA non-coding upstream 89178 39833539 ~ 39915052 (+)
G141438 NA non-coding upstream 154882 39849073 ~ 39849348 (+)
G141613 NA non-coding downstream 229230 40236507 ~ 40294116 (+)
G141799 NA non-coding downstream 398217 40405494 ~ 40406246 (+)
G142202 NA non-coding downstream 425071 40432348 ~ 40432598 (+)
G142204 NA non-coding downstream 426252 40433529 ~ 40433864 (+)
G139179 NA other upstream 1952486 38051359 ~ 38051744 (+)
G139101 NA other upstream 2060218 37943742 ~ 37944012 (+)
G139089 LOC106605123 other upstream 2063516 37919735 ~ 37940714 (+)
G139004 NA other upstream 2180220 37777061 ~ 37824010 (+)
LOC110488849 LOC106605147 other upstream 3602259 36354883 ~ 36405310 (+)
LOC110489834 eny2 other downstream 1532018 41539240 ~ 41541654 (+)
G143938 LOC106605049 other downstream 1961097 41968374 ~ 41969317 (+)
G144661 NA other downstream 2503053 42510330 ~ 42566030 (+)
G146054 LOC100136012 other downstream 3723595 43730872 ~ 43731218 (+)
G146091 NA other downstream 3761430 43768707 ~ 43769162 (+)

Expression


Co-expression Network