G142869 (LOC106605067)


Basic Information

Item Value
gene id G142869
gene name LOC106605067
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 40785254 ~ 40786328 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU164081
TTGGCTTGGACCAGGAGTAGGGGTGCTGGGGCACGTCTAGGAAGCCCCCACAGTAGCTCTCCTTCTTGAAAGGCAGGCGGGAGATGTAGTCCTCCTGGAGGAGCTCGCTCCCAAggcccatctcctctcctcccggcTCCGTCTTCAGGCTCATGGTGGGGCTGTGGTCTAGGTTGGTCTTGCGGGCCTTGACGGGGACACCCTCGCCCATGTCGACCAGTCCGTCGGTGGTGAGGGCGTTGATGGCTGCCACGATGGCAGAGTTGGTGTACTGGTTGGTGTTGGCCAGCCAGCTGTCGTCTGTGACACTGACCCTGGGCGAACCGCGCGGGGAAGGCGTGGACGACTGGTTGGGCGAGTAGGTTGGCTGTCTGTAGGTGGTGCCGTTGAAGCTGTATTTTCTCTTCCCCACGCCAACACTGCCACCTCCTCCGCTGCAAGCCGGGGAGTTGGGCCTGGAGCTTCCACAGGAGGCCTGTCCCACCCAGCCCTCTTCAGCTTGAGCCCCGATCAGGGGGGAGGTGGATGGCGAGTGGCGTGGGGAGGTTGAGGGGGGGCCGAGAGGAGCGTgtgggcaggagaggagagaggacgagcCTTTCGGAGAGACACAAGGAGACTGCCATGGCGAGTTCTGGGATGAGTTGTCATAGTTGTAAAAGCCAGACTCGTAGGACGACGCATCCGAGTTGCAGCTACGTGATGACACGCTGCTGGCCGGGCTGAGGCAACTGGGGTCGCGGTAGCCATCGCCGTTTGGTAGCGTCAGGGTCACAATGGAGTTGACCCCCCGCTTGTGGTGGACGATGTGGTCCATGCTGctgctctcctccacctcctcctcaggGTACTGGTGGTACGCTGTGATCTCGATGCGAGGACTCTCCAGGGCCGGGGCCCCGTTAGGCCTCAGGCCGTGGGACATGTAGTAGCCCTGGGCTGGGTTGTGGTTGTTGTGATCGTGGAGACCGTAGCCTGTCTGGTGGCAGGAGGACACGGAGATAATGGGGCTGGACTGCAGTGTGTGGTACTGGGTGGCCAGACAGGGATTTCCCATGCCCAGTGGCAGGGACAG

Function

NR:

description
nuclear factor of activated T-cells, cytoplasmic 1-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU164081 True 1075 lncRNA 0.62 1 40785254 40786328

Neighbor

gene id symbol gene type direction distance location
LOC110489653 LOC106605072 coding downstream 486921 40224622 ~ 40298333 (-)
LOC110489634 LOC106605073 coding downstream 706255 40003770 ~ 40078999 (-)
LOC110489623 zadh2 coding downstream 963409 39814123 ~ 39821845 (-)
nr0b2a LOC106605079 coding downstream 1229821 39553803 ~ 39555433 (-)
LOC118940039 NA coding downstream 1283766 39499737 ~ 39501488 (-)
LOC110489712 LOC106605066 coding upstream 67887 40854215 ~ 40861194 (-)
LOC110489774 LOC106583729 coding upstream 81561 40867889 ~ 40907134 (-)
LOC110489723 NA coding upstream 141888 40928216 ~ 41111980 (-)
LOC110489798 LOC106583742 coding upstream 370680 41157008 ~ 41237519 (-)
LOC110489806 if36 coding upstream 453564 41239892 ~ 41285762 (-)
G142867 NA non-coding downstream 3658 40781017 ~ 40781596 (-)
G142865 NA non-coding downstream 4616 40777517 ~ 40780638 (-)
G142642 NA non-coding downstream 10239 40774777 ~ 40775015 (-)
G142635 NA non-coding downstream 15364 40769610 ~ 40769890 (-)
G142607 NA non-coding downstream 47708 40737272 ~ 40737546 (-)
G142877 NA non-coding upstream 10089 40796417 ~ 40796645 (-)
G142880 NA non-coding upstream 11642 40797970 ~ 40798182 (-)
G142881 NA non-coding upstream 12035 40798363 ~ 40798569 (-)
G142886 NA non-coding upstream 17880 40804208 ~ 40804523 (-)
G142888 NA non-coding upstream 19255 40805583 ~ 40805818 (-)
G141363 LOC106605077 other downstream 1019781 39763933 ~ 39765473 (-)
G140879 NA other downstream 1720836 39063862 ~ 39064418 (-)
G140479 NA other downstream 1957059 38827909 ~ 38828195 (-)
LOC110489105 LOC106605178 other downstream 2736588 38046700 ~ 38048666 (-)
G142918 NA other upstream 76886 40863214 ~ 40863721 (-)
LOC110489860 LOC106605053 other upstream 928218 41714269 ~ 41730507 (-)
G145010 NA other upstream 1920490 42706818 ~ 42707279 (-)
G145767 NA other upstream 2484389 43270717 ~ 43272516 (-)
LOC110490183 LOC106605015 other upstream 2586512 43372725 ~ 43392160 (-)

Expression


Co-expression Network